Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_65p00360 and PGA1_65p00370 are separated by 77 nucleotides PGA1_65p00370 and PGA1_65p00380 overlap by 4 nucleotides
PGA1_65p00360: PGA1_65p00360 - glycosyl transferase domain-containing protein, at 48,716 to 51,433
_65p00360
PGA1_65p00370: PGA1_65p00370 - putative glycosyl transferase, at 51,511 to 52,428
_65p00370
PGA1_65p00380: PGA1_65p00380 - hypothetical protein, at 52,425 to 53,744
_65p00380
Position (kb) 51
52
53 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 50.531 kb on + strand, within PGA1_65p00360 at 50.631 kb on - strand, within PGA1_65p00360 at 50.908 kb on + strand, within PGA1_65p00360 at 51.076 kb on + strand, within PGA1_65p00360 at 51.135 kb on - strand, within PGA1_65p00360 at 51.146 kb on + strand, within PGA1_65p00360 at 51.337 kb on + strand at 51.481 kb on + strand at 51.557 kb on - strand at 51.665 kb on - strand, within PGA1_65p00370 at 51.670 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.675 kb on - strand, within PGA1_65p00370 at 51.736 kb on + strand, within PGA1_65p00370 at 51.800 kb on - strand, within PGA1_65p00370 at 51.817 kb on + strand, within PGA1_65p00370 at 51.830 kb on + strand, within PGA1_65p00370 at 51.913 kb on - strand, within PGA1_65p00370 at 51.965 kb on - strand, within PGA1_65p00370 at 51.990 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.135 kb on - strand, within PGA1_65p00370 at 52.344 kb on - strand at 52.445 kb on - strand at 52.448 kb on - strand at 52.691 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.197 kb on - strand, within PGA1_65p00380 at 53.198 kb on - strand, within PGA1_65p00380 at 53.261 kb on + strand, within PGA1_65p00380
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 50,531 + PGA1_65p00360 0.67 -0.4 50,631 - PGA1_65p00360 0.70 +1.2 50,908 + PGA1_65p00360 0.81 +0.1 51,076 + PGA1_65p00360 0.87 -0.7 51,135 - PGA1_65p00360 0.89 +0.5 51,146 + PGA1_65p00360 0.89 -0.6 51,337 + +0.8 51,481 + -2.8 51,557 - -0.0 51,665 - PGA1_65p00370 0.17 +0.8 51,670 - PGA1_65p00370 0.17 -0.5 51,675 - PGA1_65p00370 0.18 +1.5 51,675 - PGA1_65p00370 0.18 -0.3 51,736 + PGA1_65p00370 0.25 +0.2 51,800 - PGA1_65p00370 0.31 +0.8 51,817 + PGA1_65p00370 0.33 -1.1 51,830 + PGA1_65p00370 0.35 +1.2 51,913 - PGA1_65p00370 0.44 -1.8 51,965 - PGA1_65p00370 0.49 -0.3 51,990 - PGA1_65p00370 0.52 +0.5 52,135 - PGA1_65p00370 0.68 -0.3 52,135 - PGA1_65p00370 0.68 +0.9 52,344 - -1.0 52,445 - +0.4 52,448 - +0.5 52,691 - PGA1_65p00380 0.20 -0.3 53,197 - PGA1_65p00380 0.58 +0.2 53,197 - PGA1_65p00380 0.58 +0.2 53,198 - PGA1_65p00380 0.59 -1.8 53,261 + PGA1_65p00380 0.63 +0.5
Or see this region's nucleotide sequence