Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_78p00320 and PGA1_78p00330 are separated by 37 nucleotides PGA1_78p00330 and PGA1_78p00340 are separated by 81 nucleotides PGA1_78p00340 and PGA1_78p00350 are separated by 56 nucleotides
PGA1_78p00320: PGA1_78p00320 - putative HTH-type transcriptional regulator, at 39,674 to 40,717
_78p00320
PGA1_78p00330: PGA1_78p00330 - putative transcriptional regulator, at 40,755 to 41,387
_78p00330
PGA1_78p00340: PGA1_78p00340 - Uncharacterized protein, possibly involved in utilization of glycolate and propanediol, at 41,469 to 41,960
_78p00340
PGA1_78p00350: PGA1_78p00350 - FAD dependent oxidoreductase, at 42,017 to 43,354
_78p00350
Position (kb) 41
42 Strain fitness (log2 ratio) -2
-1
0
1 at 41.050 kb on - strand, within PGA1_78p00330 at 41.457 kb on + strand at 41.457 kb on + strand at 41.465 kb on - strand at 41.538 kb on - strand, within PGA1_78p00340 at 41.556 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.729 kb on - strand, within PGA1_78p00340 at 41.765 kb on - strand, within PGA1_78p00340 at 42.020 kb on + strand at 42.539 kb on - strand, within PGA1_78p00350 at 42.737 kb on + strand, within PGA1_78p00350
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 41,050 - PGA1_78p00330 0.47 +0.3 41,457 + +0.0 41,457 + +1.2 41,465 - -1.8 41,538 - PGA1_78p00340 0.14 -0.2 41,556 - PGA1_78p00340 0.18 +0.6 41,729 - PGA1_78p00340 0.53 +0.3 41,729 - PGA1_78p00340 0.53 -1.0 41,729 - PGA1_78p00340 0.53 +1.2 41,765 - PGA1_78p00340 0.60 +0.9 42,020 + +0.1 42,539 - PGA1_78p00350 0.39 -0.8 42,737 + PGA1_78p00350 0.54 +0.3
Or see this region's nucleotide sequence