Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p02000 and PGA1_262p02010 are separated by 269 nucleotides PGA1_262p02010 and PGA1_262p02020 are separated by 309 nucleotides
PGA1_262p02000: PGA1_262p02000 - putative transcriptional regulator, LysR type, at 218,693 to 219,550
_262p02000
PGA1_262p02010: PGA1_262p02010 - Uncharacterized conserved protein, at 219,820 to 220,068
_262p02010
PGA1_262p02020: PGA1_262p02020 - putative integrase, at 220,378 to 221,682
_262p02020
Position (kb) 219
220
221 Strain fitness (log2 ratio) -1
0
1 at 218.860 kb on - strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.908 kb on + strand, within PGA1_262p02000 at 218.916 kb on - strand, within PGA1_262p02000 at 218.928 kb on + strand, within PGA1_262p02000 at 218.929 kb on - strand, within PGA1_262p02000 at 218.951 kb on - strand, within PGA1_262p02000 at 219.070 kb on - strand, within PGA1_262p02000 at 219.074 kb on + strand, within PGA1_262p02000 at 219.118 kb on + strand, within PGA1_262p02000 at 219.402 kb on + strand, within PGA1_262p02000 at 219.416 kb on + strand, within PGA1_262p02000 at 219.480 kb on + strand at 219.480 kb on + strand at 219.480 kb on + strand at 219.488 kb on - strand at 219.488 kb on - strand at 219.585 kb on - strand at 219.585 kb on - strand at 219.595 kb on + strand at 219.626 kb on + strand at 219.632 kb on - strand at 219.640 kb on + strand at 219.667 kb on + strand at 219.667 kb on + strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.675 kb on - strand at 219.698 kb on - strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.780 kb on + strand at 219.782 kb on + strand at 219.788 kb on - strand at 219.788 kb on - strand at 219.810 kb on + strand at 219.845 kb on - strand, within PGA1_262p02010 at 219.896 kb on - strand, within PGA1_262p02010 at 219.961 kb on - strand, within PGA1_262p02010 at 220.010 kb on + strand, within PGA1_262p02010
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 218,860 - PGA1_262p02000 0.19 +0.3 218,908 + PGA1_262p02000 0.25 -0.5 218,908 + PGA1_262p02000 0.25 +0.2 218,916 - PGA1_262p02000 0.26 +0.9 218,928 + PGA1_262p02000 0.27 +0.1 218,929 - PGA1_262p02000 0.28 +0.5 218,951 - PGA1_262p02000 0.30 -0.6 219,070 - PGA1_262p02000 0.44 +0.1 219,074 + PGA1_262p02000 0.44 +0.5 219,118 + PGA1_262p02000 0.50 -0.1 219,402 + PGA1_262p02000 0.83 +0.1 219,416 + PGA1_262p02000 0.84 -0.2 219,480 + +0.5 219,480 + -0.2 219,480 + +0.7 219,488 - -0.7 219,488 - -0.1 219,585 - -0.2 219,585 - +1.1 219,595 + +1.5 219,626 + -1.1 219,632 - -0.6 219,640 + +0.1 219,667 + -0.3 219,667 + +0.5 219,675 - -0.1 219,675 - +0.4 219,675 - -1.4 219,698 - -0.1 219,780 + +1.0 219,780 + -1.0 219,780 + +1.3 219,780 + +0.3 219,782 + +0.1 219,788 - -0.2 219,788 - -0.2 219,810 + -1.1 219,845 - PGA1_262p02010 0.10 +0.3 219,896 - PGA1_262p02010 0.31 +0.2 219,961 - PGA1_262p02010 0.57 -0.2 220,010 + PGA1_262p02010 0.76 +1.1
Or see this region's nucleotide sequence