Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01660 and PGA1_262p01670 are separated by 297 nucleotides PGA1_262p01670 and PGA1_262p01680 are separated by 57 nucleotides PGA1_262p01680 and PGA1_262p01690 are separated by 107 nucleotides
PGA1_262p01660: PGA1_262p01660 - transposase, at 181,003 to 182,307
_262p01660
PGA1_262p01670: PGA1_262p01670 - putative transcriptional regulator, LysR family, at 182,605 to 183,483
_262p01670
PGA1_262p01680: PGA1_262p01680 - hypothetical protein, at 183,541 to 184,329
_262p01680
PGA1_262p01690: PGA1_262p01690 - peptidase S15, at 184,437 to 186,416
_262p01690
Position (kb) 182
183
184 Strain fitness (log2 ratio) -1
0
1 at 182.675 kb on + strand at 182.712 kb on - strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.721 kb on + strand, within PGA1_262p01670 at 182.736 kb on + strand, within PGA1_262p01670 at 182.749 kb on + strand, within PGA1_262p01670 at 182.879 kb on + strand, within PGA1_262p01670 at 182.887 kb on - strand, within PGA1_262p01670 at 182.925 kb on - strand, within PGA1_262p01670 at 182.960 kb on + strand, within PGA1_262p01670 at 183.106 kb on - strand, within PGA1_262p01670 at 183.112 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.156 kb on - strand, within PGA1_262p01670 at 183.218 kb on - strand, within PGA1_262p01670 at 183.223 kb on - strand, within PGA1_262p01670 at 183.243 kb on - strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.257 kb on + strand, within PGA1_262p01670 at 183.262 kb on + strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.265 kb on - strand, within PGA1_262p01670 at 183.609 kb on + strand at 183.617 kb on - strand at 183.734 kb on - strand, within PGA1_262p01680 at 183.734 kb on - strand, within PGA1_262p01680 at 183.762 kb on + strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.775 kb on - strand, within PGA1_262p01680 at 183.803 kb on - strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.960 kb on + strand, within PGA1_262p01680 at 183.968 kb on - strand, within PGA1_262p01680 at 184.074 kb on + strand, within PGA1_262p01680 at 184.270 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 182,675 + -0.6 182,712 - PGA1_262p01670 0.12 -0.6 182,721 + PGA1_262p01670 0.13 -1.1 182,721 + PGA1_262p01670 0.13 +0.1 182,736 + PGA1_262p01670 0.15 -0.4 182,749 + PGA1_262p01670 0.16 -0.5 182,879 + PGA1_262p01670 0.31 -0.4 182,887 - PGA1_262p01670 0.32 +1.4 182,925 - PGA1_262p01670 0.36 -1.5 182,960 + PGA1_262p01670 0.40 +1.1 183,106 - PGA1_262p01670 0.57 -0.9 183,112 - PGA1_262p01670 0.58 +1.1 183,156 - PGA1_262p01670 0.63 +0.7 183,156 - PGA1_262p01670 0.63 -1.0 183,218 - PGA1_262p01670 0.70 +1.7 183,223 - PGA1_262p01670 0.70 +1.4 183,243 - PGA1_262p01670 0.73 +0.1 183,257 + PGA1_262p01670 0.74 +0.5 183,257 + PGA1_262p01670 0.74 -0.4 183,262 + PGA1_262p01670 0.75 +0.9 183,265 - PGA1_262p01670 0.75 +0.4 183,265 - PGA1_262p01670 0.75 +1.1 183,609 + +0.5 183,617 - -1.4 183,734 - PGA1_262p01680 0.24 -0.1 183,734 - PGA1_262p01680 0.24 -0.8 183,762 + PGA1_262p01680 0.28 -0.0 183,775 - PGA1_262p01680 0.30 +0.0 183,775 - PGA1_262p01680 0.30 +0.6 183,803 - PGA1_262p01680 0.33 +0.2 183,960 + PGA1_262p01680 0.53 -0.6 183,960 + PGA1_262p01680 0.53 -0.1 183,968 - PGA1_262p01680 0.54 -0.1 184,074 + PGA1_262p01680 0.68 -0.6 184,270 + -1.5
Or see this region's nucleotide sequence