Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p01460 and PGA1_262p01470 are separated by 65 nucleotides PGA1_262p01470 and PGA1_262p01480 overlap by 4 nucleotides PGA1_262p01480 and PGA1_262p01490 are separated by 32 nucleotides PGA1_262p01490 and PGA1_262p01500 overlap by 8 nucleotides
PGA1_262p01460: PGA1_262p01460 - aldehyde dehydrogenase, at 159,077 to 160,570
_262p01460
PGA1_262p01470: PGA1_262p01470 - transcriptional regulator, LysR family, at 160,636 to 161,532
_262p01470
PGA1_262p01480: PGA1_262p01480 - transcriptional regulator, AraC family, at 161,529 to 162,536
_262p01480
PGA1_262p01490: PGA1_262p01490 - putative sarcosine oxidase, gamma subunit, at 162,569 to 163,132
_262p01490
PGA1_262p01500: PGA1_262p01500 - sarcosine oxidase subunit alpha, at 163,125 to 166,091
_262p01500
Position (kb) 161
162
163 Strain fitness (log2 ratio) -1
0
1 at 160.534 kb on - strand at 160.569 kb on - strand at 160.929 kb on + strand, within PGA1_262p01470 at 160.949 kb on + strand, within PGA1_262p01470 at 161.027 kb on + strand, within PGA1_262p01470 at 161.091 kb on - strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.129 kb on + strand, within PGA1_262p01470 at 161.251 kb on - strand, within PGA1_262p01470 at 161.268 kb on + strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.276 kb on - strand, within PGA1_262p01470 at 161.300 kb on + strand, within PGA1_262p01470 at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.457 kb on + strand at 161.534 kb on - strand at 161.591 kb on - strand at 161.613 kb on - strand at 162.040 kb on + strand, within PGA1_262p01480 at 162.267 kb on - strand, within PGA1_262p01480 at 162.312 kb on - strand, within PGA1_262p01480 at 162.317 kb on - strand, within PGA1_262p01480 at 162.588 kb on + strand at 162.588 kb on + strand at 162.694 kb on - strand, within PGA1_262p01490 at 162.740 kb on + strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 162.917 kb on - strand, within PGA1_262p01490 at 163.116 kb on - strand at 163.136 kb on + strand at 163.246 kb on + strand at 163.302 kb on + strand at 163.310 kb on - strand at 163.436 kb on - strand, within PGA1_262p01500
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 160,534 - -0.6 160,569 - -0.1 160,929 + PGA1_262p01470 0.33 -0.7 160,949 + PGA1_262p01470 0.35 -0.6 161,027 + PGA1_262p01470 0.44 -0.3 161,091 - PGA1_262p01470 0.51 +0.4 161,129 + PGA1_262p01470 0.55 -0.5 161,129 + PGA1_262p01470 0.55 +0.1 161,251 - PGA1_262p01470 0.69 -0.9 161,268 + PGA1_262p01470 0.70 -1.4 161,276 - PGA1_262p01470 0.71 +0.4 161,276 - PGA1_262p01470 0.71 -0.9 161,300 + PGA1_262p01470 0.74 +0.2 161,457 + +1.2 161,457 + -0.2 161,457 + -0.0 161,457 + -0.2 161,457 + +0.0 161,534 - +0.2 161,591 - +0.3 161,613 - -0.3 162,040 + PGA1_262p01480 0.51 -0.9 162,267 - PGA1_262p01480 0.73 -0.4 162,312 - PGA1_262p01480 0.78 +0.3 162,317 - PGA1_262p01480 0.78 -0.2 162,588 + +0.7 162,588 + -0.6 162,694 - PGA1_262p01490 0.22 +0.2 162,740 + PGA1_262p01490 0.30 -1.5 162,917 - PGA1_262p01490 0.62 +0.4 162,917 - PGA1_262p01490 0.62 +0.7 163,116 - +0.3 163,136 + -0.1 163,246 + -0.5 163,302 + +0.2 163,310 - -1.0 163,436 - PGA1_262p01500 0.10 -0.3
Or see this region's nucleotide sequence