Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00870 and PGA1_262p00880 are separated by 4 nucleotides PGA1_262p00880 and PGA1_262p00890 are separated by 0 nucleotides PGA1_262p00890 and PGA1_262p00900 overlap by 4 nucleotides
PGA1_262p00870: PGA1_262p00870 - ABC transporter, extracellular solute-binding protein, at 96,898 to 98,499
_262p00870
PGA1_262p00880: PGA1_262p00880 - ABC transporter, integral inner membrane component, at 98,504 to 99,547
_262p00880
PGA1_262p00890: PGA1_262p00890 - ABC transporter, integral inner membrane component, at 99,548 to 100,357
_262p00890
PGA1_262p00900: PGA1_262p00900 - ABC transporter, ATP-binding protein, at 100,354 to 101,850
_262p00900
Position (kb) 98
99
100 Strain fitness (log2 ratio) -2
-1
0
1 at 97.605 kb on + strand, within PGA1_262p00870 at 97.803 kb on - strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.807 kb on + strand, within PGA1_262p00870 at 97.880 kb on - strand, within PGA1_262p00870 at 98.142 kb on + strand, within PGA1_262p00870 at 98.189 kb on - strand, within PGA1_262p00870 at 98.276 kb on - strand, within PGA1_262p00870 at 98.790 kb on + strand, within PGA1_262p00880 at 98.793 kb on - strand, within PGA1_262p00880 at 98.873 kb on + strand, within PGA1_262p00880 at 98.999 kb on - strand, within PGA1_262p00880 at 99.166 kb on + strand, within PGA1_262p00880 at 99.222 kb on + strand, within PGA1_262p00880 at 99.223 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.356 kb on + strand, within PGA1_262p00880 at 99.364 kb on - strand, within PGA1_262p00880 at 99.369 kb on - strand, within PGA1_262p00880 at 99.789 kb on + strand, within PGA1_262p00890 at 99.955 kb on + strand, within PGA1_262p00890 at 100.409 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 97,605 + PGA1_262p00870 0.44 -0.5 97,803 - PGA1_262p00870 0.56 -0.6 97,807 + PGA1_262p00870 0.57 -0.1 97,807 + PGA1_262p00870 0.57 -0.4 97,880 - PGA1_262p00870 0.61 -0.9 98,142 + PGA1_262p00870 0.78 -1.0 98,189 - PGA1_262p00870 0.81 -1.5 98,276 - PGA1_262p00870 0.86 -2.3 98,790 + PGA1_262p00880 0.27 -0.5 98,793 - PGA1_262p00880 0.28 +0.6 98,873 + PGA1_262p00880 0.35 -1.4 98,999 - PGA1_262p00880 0.47 -0.9 99,166 + PGA1_262p00880 0.63 +0.0 99,222 + PGA1_262p00880 0.69 +0.1 99,223 + PGA1_262p00880 0.69 +0.1 99,356 + PGA1_262p00880 0.82 -1.1 99,356 + PGA1_262p00880 0.82 -1.6 99,364 - PGA1_262p00880 0.82 -1.6 99,369 - PGA1_262p00880 0.83 -1.2 99,789 + PGA1_262p00890 0.30 -0.4 99,955 + PGA1_262p00890 0.50 -1.5 100,409 - -0.2
Or see this region's nucleotide sequence