Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_262p00230 and PGA1_262p00240 are separated by 126 nucleotides PGA1_262p00240 and PGA1_262p00250 are separated by 41 nucleotides PGA1_262p00250 and PGA1_262p00260 are separated by 109 nucleotides PGA1_262p00260 and PGA1_262p00270 are separated by 155 nucleotides
PGA1_262p00230: PGA1_262p00230 - betaine aldehyde dehydrogenase BetB, at 27,589 to 29,073
_262p00230
PGA1_262p00240: PGA1_262p00240 - Protein of unknown function (DUF1289)., at 29,200 to 29,445
_262p00240
PGA1_262p00250: PGA1_262p00250 - ferritin-like protein, at 29,487 to 29,960
_262p00250
PGA1_262p00260: PGA1_262p00260 - hypothetical protein, at 30,070 to 30,510
_262p00260
PGA1_262p00270: PGA1_262p00270 - transcriptional regulator, GntR family, at 30,666 to 31,334
_262p00270
Position (kb) 29
30 Strain fitness (log2 ratio) -1
0
1 at 28.639 kb on + strand, within PGA1_262p00230 at 28.698 kb on - strand, within PGA1_262p00230 at 28.743 kb on + strand, within PGA1_262p00230 at 28.818 kb on + strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.913 kb on - strand, within PGA1_262p00230 at 28.942 kb on + strand at 28.943 kb on - strand at 28.964 kb on + strand at 29.088 kb on - strand at 29.153 kb on - strand at 29.174 kb on - strand at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.230 kb on - strand, within PGA1_262p00240 at 29.250 kb on + strand, within PGA1_262p00240 at 29.348 kb on + strand, within PGA1_262p00240 at 29.380 kb on + strand, within PGA1_262p00240 at 29.484 kb on + strand at 29.484 kb on + strand at 29.484 kb on + strand at 29.492 kb on - strand at 29.492 kb on - strand at 29.632 kb on + strand, within PGA1_262p00250 at 29.733 kb on + strand, within PGA1_262p00250 at 29.897 kb on + strand, within PGA1_262p00250 at 29.901 kb on - strand, within PGA1_262p00250 at 29.906 kb on - strand, within PGA1_262p00250 at 29.954 kb on + strand at 30.013 kb on + strand at 30.022 kb on - strand at 30.032 kb on - strand at 30.047 kb on + strand at 30.140 kb on + strand, within PGA1_262p00260 at 30.142 kb on - strand, within PGA1_262p00260 at 30.169 kb on + strand, within PGA1_262p00260 at 30.177 kb on - strand, within PGA1_262p00260 at 30.178 kb on - strand, within PGA1_262p00260 at 30.232 kb on - strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.268 kb on + strand, within PGA1_262p00260 at 30.283 kb on - strand, within PGA1_262p00260 at 30.343 kb on - strand, within PGA1_262p00260 at 30.402 kb on + strand, within PGA1_262p00260 at 30.493 kb on + strand at 30.589 kb on + strand at 30.597 kb on - strand at 30.597 kb on - strand at 30.657 kb on + strand at 30.703 kb on + strand at 30.822 kb on + strand, within PGA1_262p00270
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 28,639 + PGA1_262p00230 0.71 +0.2 28,698 - PGA1_262p00230 0.75 -0.0 28,743 + PGA1_262p00230 0.78 +0.1 28,818 + PGA1_262p00230 0.83 -1.7 28,913 - PGA1_262p00230 0.89 -1.6 28,913 - PGA1_262p00230 0.89 -0.2 28,942 + +0.9 28,943 - +0.1 28,964 + +0.1 29,088 - -0.3 29,153 - -0.5 29,174 - -0.3 29,230 - PGA1_262p00240 0.12 -0.2 29,230 - PGA1_262p00240 0.12 +0.4 29,230 - PGA1_262p00240 0.12 -1.1 29,250 + PGA1_262p00240 0.20 +0.1 29,348 + PGA1_262p00240 0.60 +1.1 29,380 + PGA1_262p00240 0.73 -0.1 29,484 + -0.0 29,484 + -1.2 29,484 + +0.6 29,492 - +1.6 29,492 - +0.5 29,632 + PGA1_262p00250 0.31 +0.3 29,733 + PGA1_262p00250 0.52 +0.3 29,897 + PGA1_262p00250 0.86 +0.4 29,901 - PGA1_262p00250 0.87 +1.7 29,906 - PGA1_262p00250 0.88 -0.0 29,954 + +1.2 30,013 + +0.0 30,022 - +0.9 30,032 - +1.4 30,047 + -0.1 30,140 + PGA1_262p00260 0.16 -0.2 30,142 - PGA1_262p00260 0.16 -0.0 30,169 + PGA1_262p00260 0.22 -1.4 30,177 - PGA1_262p00260 0.24 -0.1 30,178 - PGA1_262p00260 0.24 +0.1 30,232 - PGA1_262p00260 0.37 +0.6 30,268 + PGA1_262p00260 0.45 +0.2 30,268 + PGA1_262p00260 0.45 +0.3 30,268 + PGA1_262p00260 0.45 -0.4 30,283 - PGA1_262p00260 0.48 +0.1 30,343 - PGA1_262p00260 0.62 -0.5 30,402 + PGA1_262p00260 0.75 -0.4 30,493 + +0.2 30,589 + +0.4 30,597 - -0.0 30,597 - +0.1 30,657 + -0.9 30,703 + +0.2 30,822 + PGA1_262p00270 0.23 -0.1
Or see this region's nucleotide sequence