Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36120 and PGA1_c36130 are separated by 419 nucleotides PGA1_c36130 and PGA1_c36140 are separated by 103 nucleotides
PGA1_c36120: PGA1_c36120 - putative glutathione S-transferase, at 3,780,904 to 3,781,569
_c36120
PGA1_c36130: PGA1_c36130 - putative serine/threonine phosphatase, at 3,781,989 to 3,782,729
_c36130
PGA1_c36140: PGA1_c36140 - D-3-phosphoglycerate dehydrogenase SerA, at 3,782,833 to 3,784,428
_c36140
Position (kb)
3781
3782
3783 Strain fitness (log2 ratio)
-3
-2
-1
0
1 at 3781.592 kb on - strand at 3781.658 kb on + strand at 3781.661 kb on - strand at 3781.668 kb on + strand at 3781.668 kb on + strand at 3781.676 kb on - strand at 3781.684 kb on - strand at 3781.700 kb on - strand at 3781.704 kb on - strand at 3781.733 kb on + strand at 3781.736 kb on + strand at 3781.741 kb on - strand at 3781.754 kb on - strand at 3781.784 kb on + strand at 3781.789 kb on + strand at 3781.792 kb on - strand at 3781.830 kb on - strand at 3781.835 kb on - strand at 3781.835 kb on - strand at 3781.877 kb on - strand at 3781.877 kb on - strand at 3781.879 kb on + strand at 3781.879 kb on + strand at 3781.887 kb on - strand at 3781.887 kb on - strand at 3781.911 kb on - strand at 3781.953 kb on + strand at 3781.968 kb on - strand at 3781.971 kb on - strand at 3782.014 kb on + strand at 3782.031 kb on + strand at 3782.039 kb on - strand at 3782.039 kb on - strand at 3782.056 kb on + strand at 3782.064 kb on - strand, within PGA1_c36130 at 3782.114 kb on - strand, within PGA1_c36130 at 3782.119 kb on + strand, within PGA1_c36130 at 3782.119 kb on + strand, within PGA1_c36130 at 3782.127 kb on - strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on + strand, within PGA1_c36130 at 3782.132 kb on - strand, within PGA1_c36130 at 3782.228 kb on + strand, within PGA1_c36130 at 3782.239 kb on + strand, within PGA1_c36130 at 3782.239 kb on + strand, within PGA1_c36130 at 3782.264 kb on - strand, within PGA1_c36130 at 3782.330 kb on - strand, within PGA1_c36130 at 3782.351 kb on - strand, within PGA1_c36130 at 3782.372 kb on - strand, within PGA1_c36130 at 3782.431 kb on - strand, within PGA1_c36130 at 3782.484 kb on - strand, within PGA1_c36130 at 3782.514 kb on - strand, within PGA1_c36130 at 3782.533 kb on + strand, within PGA1_c36130 at 3782.533 kb on + strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.541 kb on - strand, within PGA1_c36130 at 3782.561 kb on + strand, within PGA1_c36130 at 3782.584 kb on - strand, within PGA1_c36130 at 3782.676 kb on - strand at 3782.676 kb on - strand at 3782.692 kb on - strand at 3782.703 kb on + strand at 3782.711 kb on - strand at 3782.711 kb on - strand at 3782.719 kb on + strand at 3782.724 kb on + strand at 3782.786 kb on + strand at 3782.816 kb on - strand at 3782.855 kb on + strand at 3782.855 kb on + strand at 3782.892 kb on - strand at 3782.947 kb on + strand at 3782.962 kb on - strand at 3782.970 kb on + strand at 3783.002 kb on + strand, within PGA1_c36140 at 3783.018 kb on + strand, within PGA1_c36140 at 3783.053 kb on + strand, within PGA1_c36140 at 3783.058 kb on + strand, within PGA1_c36140 at 3783.061 kb on - strand, within PGA1_c36140 at 3783.095 kb on + strand, within PGA1_c36140 at 3783.095 kb on + strand, within PGA1_c36140 at 3783.100 kb on + strand, within PGA1_c36140 at 3783.137 kb on + strand, within PGA1_c36140 at 3783.137 kb on + strand, within PGA1_c36140 at 3783.145 kb on - strand, within PGA1_c36140 at 3783.145 kb on - strand, within PGA1_c36140 at 3783.206 kb on + strand, within PGA1_c36140 at 3783.250 kb on + strand, within PGA1_c36140 at 3783.255 kb on + strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.258 kb on - strand, within PGA1_c36140 at 3783.322 kb on + strand, within PGA1_c36140 at 3783.330 kb on - strand, within PGA1_c36140 at 3783.330 kb on - strand, within PGA1_c36140 at 3783.356 kb on + strand, within PGA1_c36140 at 3783.364 kb on - strand, within PGA1_c36140 at 3783.378 kb on + strand, within PGA1_c36140 at 3783.421 kb on - strand, within PGA1_c36140 at 3783.432 kb on + strand, within PGA1_c36140 at 3783.440 kb on - strand, within PGA1_c36140 at 3783.440 kb on - strand, within PGA1_c36140 at 3783.446 kb on - strand, within PGA1_c36140 at 3783.462 kb on + strand, within PGA1_c36140 at 3783.479 kb on + strand, within PGA1_c36140 at 3783.580 kb on + strand, within PGA1_c36140 at 3783.586 kb on - strand, within PGA1_c36140 at 3783.593 kb on + strand, within PGA1_c36140 at 3783.602 kb on + strand, within PGA1_c36140 at 3783.602 kb on + strand, within PGA1_c36140 at 3783.637 kb on - strand, within PGA1_c36140 at 3783.685 kb on + strand, within PGA1_c36140 at 3783.696 kb on - strand, within PGA1_c36140 at 3783.701 kb on - strand, within PGA1_c36140 at 3783.707 kb on + strand, within PGA1_c36140 at 3783.715 kb on - strand, within PGA1_c36140 at 3783.715 kb on - strand, within PGA1_c36140 at 3783.720 kb on + strand, within PGA1_c36140
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 3,781,592 - +0.6 3,781,658 + -0.3 3,781,661 - -0.9 3,781,668 + -1.1 3,781,668 + +0.6 3,781,676 - -0.0 3,781,684 - +0.0 3,781,700 - +0.3 3,781,704 - -0.3 3,781,733 + +0.2 3,781,736 + +1.6 3,781,741 - +0.5 3,781,754 - +0.1 3,781,784 + -0.3 3,781,789 + -0.2 3,781,792 - +0.3 3,781,830 - -1.8 3,781,835 - -0.8 3,781,835 - +0.6 3,781,877 - +0.3 3,781,877 - +0.4 3,781,879 + -0.5 3,781,879 + +0.2 3,781,887 - +0.2 3,781,887 - +0.7 3,781,911 - -0.2 3,781,953 + +0.5 3,781,968 - +0.5 3,781,971 - +0.0 3,782,014 + +0.1 3,782,031 + +0.2 3,782,039 - +1.0 3,782,039 - -0.9 3,782,056 + +0.4 3,782,064 - PGA1_c36130 0.10 +0.3 3,782,114 - PGA1_c36130 0.17 +1.0 3,782,119 + PGA1_c36130 0.18 -0.2 3,782,119 + PGA1_c36130 0.18 +0.5 3,782,127 - PGA1_c36130 0.19 -0.6 3,782,132 + PGA1_c36130 0.19 -0.2 3,782,132 + PGA1_c36130 0.19 +0.5 3,782,132 + PGA1_c36130 0.19 -0.1 3,782,132 + PGA1_c36130 0.19 -0.4 3,782,132 + PGA1_c36130 0.19 -0.3 3,782,132 + PGA1_c36130 0.19 -0.6 3,782,132 - PGA1_c36130 0.19 +1.6 3,782,228 + PGA1_c36130 0.32 -1.3 3,782,239 + PGA1_c36130 0.34 +0.4 3,782,239 + PGA1_c36130 0.34 +0.3 3,782,264 - PGA1_c36130 0.37 +0.1 3,782,330 - PGA1_c36130 0.46 +0.7 3,782,351 - PGA1_c36130 0.49 +0.1 3,782,372 - PGA1_c36130 0.52 -0.6 3,782,431 - PGA1_c36130 0.60 +0.4 3,782,484 - PGA1_c36130 0.67 +1.4 3,782,514 - PGA1_c36130 0.71 -0.5 3,782,533 + PGA1_c36130 0.73 +0.4 3,782,533 + PGA1_c36130 0.73 +1.3 3,782,541 - PGA1_c36130 0.74 -0.8 3,782,541 - PGA1_c36130 0.74 +0.8 3,782,541 - PGA1_c36130 0.74 +0.8 3,782,561 + PGA1_c36130 0.77 +0.3 3,782,584 - PGA1_c36130 0.80 +0.5 3,782,676 - -0.6 3,782,676 - -1.1 3,782,692 - -0.0 3,782,703 + -0.7 3,782,711 - +0.9 3,782,711 - +1.6 3,782,719 + -0.2 3,782,724 + -0.6 3,782,786 + -1.8 3,782,816 - -0.5 3,782,855 + +0.2 3,782,855 + +0.4 3,782,892 - -0.8 3,782,947 + -0.8 3,782,962 - -0.7 3,782,970 + -0.3 3,783,002 + PGA1_c36140 0.11 -0.4 3,783,018 + PGA1_c36140 0.12 +0.1 3,783,053 + PGA1_c36140 0.14 -0.9 3,783,058 + PGA1_c36140 0.14 -0.0 3,783,061 - PGA1_c36140 0.14 -0.1 3,783,095 + PGA1_c36140 0.16 +0.1 3,783,095 + PGA1_c36140 0.16 -0.4 3,783,100 + PGA1_c36140 0.17 -0.4 3,783,137 + PGA1_c36140 0.19 +0.9 3,783,137 + PGA1_c36140 0.19 +0.9 3,783,145 - PGA1_c36140 0.20 -0.2 3,783,145 - PGA1_c36140 0.20 -0.6 3,783,206 + PGA1_c36140 0.23 +0.6 3,783,250 + PGA1_c36140 0.26 +0.9 3,783,255 + PGA1_c36140 0.26 -1.1 3,783,258 - PGA1_c36140 0.27 -0.3 3,783,258 - PGA1_c36140 0.27 -0.5 3,783,258 - PGA1_c36140 0.27 +0.1 3,783,258 - PGA1_c36140 0.27 -3.2 3,783,322 + PGA1_c36140 0.31 -0.3 3,783,330 - PGA1_c36140 0.31 +0.3 3,783,330 - PGA1_c36140 0.31 -0.4 3,783,356 + PGA1_c36140 0.33 +0.2 3,783,364 - PGA1_c36140 0.33 -0.2 3,783,378 + PGA1_c36140 0.34 -0.3 3,783,421 - PGA1_c36140 0.37 -0.1 3,783,432 + PGA1_c36140 0.38 +0.0 3,783,440 - PGA1_c36140 0.38 -1.0 3,783,440 - PGA1_c36140 0.38 -0.5 3,783,446 - PGA1_c36140 0.38 +0.5 3,783,462 + PGA1_c36140 0.39 -0.3 3,783,479 + PGA1_c36140 0.40 -0.1 3,783,580 + PGA1_c36140 0.47 -0.4 3,783,586 - PGA1_c36140 0.47 -1.4 3,783,593 + PGA1_c36140 0.48 +1.0 3,783,602 + PGA1_c36140 0.48 -0.2 3,783,602 + PGA1_c36140 0.48 +0.1 3,783,637 - PGA1_c36140 0.50 +0.2 3,783,685 + PGA1_c36140 0.53 -0.6 3,783,696 - PGA1_c36140 0.54 +0.9 3,783,701 - PGA1_c36140 0.54 +0.4 3,783,707 + PGA1_c36140 0.55 -0.1 3,783,715 - PGA1_c36140 0.55 +1.6 3,783,715 - PGA1_c36140 0.55 +0.2 3,783,720 + PGA1_c36140 0.56 +1.1
Or see this region's nucleotide sequence