Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c36000 and PGA1_c36010 are separated by 15 nucleotides PGA1_c36010 and PGA1_c36020 overlap by 4 nucleotides PGA1_c36020 and PGA1_c36030 are separated by 222 nucleotides PGA1_c36030 and PGA1_c36040 are separated by 191 nucleotides PGA1_c36040 and PGA1_c36050 are separated by 141 nucleotides
PGA1_c36000: PGA1_c36000 - Protein of unknown function (DUF1239)., at 3,768,212 to 3,768,811
_c36000
PGA1_c36010: PGA1_c36010 - arabinose 5-phosphate isomerase KdsD, at 3,768,827 to 3,769,798
_c36010
PGA1_c36020: PGA1_c36020 - putative 3'-5'-exonuclease, at 3,769,795 to 3,770,409
_c36020
PGA1_c36030: PGA1_c36030 - tRNA-Leu, at 3,770,632 to 3,770,718
_c36030
PGA1_c36040: PGA1_c36040 - tRNA-Leu, at 3,770,910 to 3,770,996
_c36040
PGA1_c36050: PGA1_c36050 - putative globin, at 3,771,138 to 3,771,548
_c36050
Position (kb)
3769
3770
3771 Strain fitness (log2 ratio)
-2
-1
0
1 at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3768.832 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3769.801 kb on - strand at 3770.084 kb on - strand, within PGA1_c36020 at 3770.091 kb on - strand, within PGA1_c36020 at 3770.214 kb on - strand, within PGA1_c36020 at 3770.492 kb on + strand at 3770.492 kb on + strand at 3770.492 kb on + strand at 3770.522 kb on + strand at 3770.529 kb on + strand at 3770.534 kb on + strand at 3770.537 kb on - strand at 3770.537 kb on - strand at 3770.537 kb on - strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.539 kb on + strand at 3770.542 kb on - strand at 3770.542 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.547 kb on - strand at 3770.566 kb on - strand at 3770.589 kb on + strand at 3770.592 kb on - strand at 3770.849 kb on - strand at 3770.859 kb on + strand at 3770.998 kb on + strand at 3771.099 kb on + strand at 3771.099 kb on + strand at 3771.099 kb on + strand at 3771.099 kb on + strand at 3771.107 kb on - strand at 3771.107 kb on - strand at 3771.112 kb on - strand at 3771.116 kb on + strand at 3771.116 kb on + strand at 3771.144 kb on - strand at 3771.154 kb on + strand at 3771.176 kb on - strand at 3771.201 kb on + strand, within PGA1_c36050 at 3771.222 kb on - strand, within PGA1_c36050 at 3771.224 kb on + strand, within PGA1_c36050 at 3771.256 kb on + strand, within PGA1_c36050 at 3771.256 kb on - strand, within PGA1_c36050 at 3771.299 kb on + strand, within PGA1_c36050 at 3771.303 kb on + strand, within PGA1_c36050 at 3771.351 kb on + strand, within PGA1_c36050 at 3771.359 kb on - strand, within PGA1_c36050 at 3771.376 kb on + strand, within PGA1_c36050 at 3771.403 kb on + strand, within PGA1_c36050 at 3771.404 kb on - strand, within PGA1_c36050
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 3,768,832 - -0.2 3,768,832 - -0.5 3,768,832 - +1.3 3,768,832 - +0.0 3,769,801 - +0.3 3,769,801 - +1.1 3,769,801 - -1.0 3,769,801 - +0.4 3,769,801 - +0.7 3,769,801 - +0.6 3,769,801 - +0.1 3,769,801 - -0.4 3,770,084 - PGA1_c36020 0.47 +0.1 3,770,091 - PGA1_c36020 0.48 -0.5 3,770,214 - PGA1_c36020 0.68 +1.2 3,770,492 + -1.4 3,770,492 + -0.3 3,770,492 + -0.1 3,770,522 + -1.2 3,770,529 + -0.2 3,770,534 + +0.2 3,770,537 - -0.3 3,770,537 - -0.1 3,770,537 - -0.2 3,770,539 + -0.8 3,770,539 + -1.2 3,770,539 + +0.6 3,770,539 + +0.2 3,770,539 + +0.6 3,770,539 + +0.4 3,770,539 + -0.9 3,770,539 + +0.5 3,770,539 + +0.1 3,770,539 + -0.1 3,770,539 + +0.5 3,770,539 + -0.6 3,770,539 + +0.7 3,770,539 + +0.5 3,770,542 - -1.8 3,770,542 - -0.2 3,770,547 - -0.2 3,770,547 - +0.6 3,770,547 - +0.5 3,770,547 - +0.3 3,770,547 - +0.3 3,770,547 - +0.3 3,770,547 - +0.1 3,770,547 - +0.1 3,770,566 - +0.4 3,770,589 + +0.2 3,770,592 - -0.7 3,770,849 - -0.6 3,770,859 + +0.1 3,770,998 + +0.4 3,771,099 + +0.1 3,771,099 + +0.2 3,771,099 + -0.5 3,771,099 + -1.4 3,771,107 - -0.2 3,771,107 - -0.2 3,771,112 - -1.0 3,771,116 + -0.5 3,771,116 + +1.0 3,771,144 - +0.3 3,771,154 + +0.6 3,771,176 - +0.2 3,771,201 + PGA1_c36050 0.15 +1.3 3,771,222 - PGA1_c36050 0.20 -0.2 3,771,224 + PGA1_c36050 0.21 +1.1 3,771,256 + PGA1_c36050 0.29 +0.2 3,771,256 - PGA1_c36050 0.29 -0.3 3,771,299 + PGA1_c36050 0.39 -0.8 3,771,303 + PGA1_c36050 0.40 +0.1 3,771,351 + PGA1_c36050 0.52 +0.5 3,771,359 - PGA1_c36050 0.54 -0.5 3,771,376 + PGA1_c36050 0.58 -0.2 3,771,403 + PGA1_c36050 0.64 -1.4 3,771,404 - PGA1_c36050 0.65 +0.9
Or see this region's nucleotide sequence