Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c32910 and PGA1_c32920 are separated by 3 nucleotides PGA1_c32920 and PGA1_c32930 are separated by 114 nucleotides PGA1_c32930 and PGA1_c32940 are separated by 17 nucleotides PGA1_c32940 and PGA1_c32950 are separated by 131 nucleotides
PGA1_c32910: PGA1_c32910 - hypothetical protein, at 3,450,973 to 3,451,152
_c32910
PGA1_c32920: PGA1_c32920 - dihydrodipicolinate reductase DapB, at 3,451,156 to 3,451,977
_c32920
PGA1_c32930: PGA1_c32930 - ribosome-binding factor A, at 3,452,092 to 3,452,487
_c32930
PGA1_c32940: PGA1_c32940 - Predicted periplasmic protein, at 3,452,505 to 3,453,242
_c32940
PGA1_c32950: PGA1_c32950 - tRNA pseudouridine synthase B, at 3,453,374 to 3,454,279
_c32950
Position (kb)
3452
3453 Strain fitness (log2 ratio)
-2
-1
0
1 at 3451.106 kb on + strand, within PGA1_c32910 at 3451.108 kb on + strand, within PGA1_c32910 at 3451.116 kb on - strand, within PGA1_c32910 at 3451.136 kb on - strand at 3451.159 kb on - strand at 3452.030 kb on + strand at 3452.043 kb on + strand at 3452.123 kb on - strand at 3452.417 kb on + strand, within PGA1_c32930 at 3452.425 kb on - strand, within PGA1_c32930 at 3452.546 kb on - strand at 3452.581 kb on - strand, within PGA1_c32940 at 3452.603 kb on - strand, within PGA1_c32940 at 3452.645 kb on + strand, within PGA1_c32940 at 3452.653 kb on - strand, within PGA1_c32940 at 3452.653 kb on - strand, within PGA1_c32940 at 3452.667 kb on + strand, within PGA1_c32940 at 3452.691 kb on + strand, within PGA1_c32940 at 3452.699 kb on - strand, within PGA1_c32940 at 3452.775 kb on + strand, within PGA1_c32940 at 3452.825 kb on + strand, within PGA1_c32940 at 3452.865 kb on - strand, within PGA1_c32940 at 3452.881 kb on + strand, within PGA1_c32940 at 3452.899 kb on - strand, within PGA1_c32940 at 3452.919 kb on - strand, within PGA1_c32940 at 3453.011 kb on - strand, within PGA1_c32940 at 3453.033 kb on + strand, within PGA1_c32940 at 3453.041 kb on - strand, within PGA1_c32940 at 3453.041 kb on - strand, within PGA1_c32940 at 3453.081 kb on + strand, within PGA1_c32940 at 3453.083 kb on + strand, within PGA1_c32940 at 3453.091 kb on - strand, within PGA1_c32940 at 3453.091 kb on - strand, within PGA1_c32940 at 3453.091 kb on - strand, within PGA1_c32940 at 3453.148 kb on - strand, within PGA1_c32940 at 3453.184 kb on - strand at 3453.195 kb on - strand at 3453.233 kb on + strand at 3453.271 kb on + strand at 3453.322 kb on + strand at 3453.434 kb on + strand at 3453.436 kb on + strand at 3453.441 kb on + strand at 3453.455 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 3,451,106 + PGA1_c32910 0.74 -1.1 3,451,108 + PGA1_c32910 0.75 -0.3 3,451,116 - PGA1_c32910 0.79 +0.2 3,451,136 - +1.2 3,451,159 - +0.6 3,452,030 + -1.0 3,452,043 + +0.1 3,452,123 - +0.0 3,452,417 + PGA1_c32930 0.82 +0.1 3,452,425 - PGA1_c32930 0.84 +0.8 3,452,546 - -0.1 3,452,581 - PGA1_c32940 0.10 -0.6 3,452,603 - PGA1_c32940 0.13 +0.3 3,452,645 + PGA1_c32940 0.19 +0.0 3,452,653 - PGA1_c32940 0.20 -0.5 3,452,653 - PGA1_c32940 0.20 -0.3 3,452,667 + PGA1_c32940 0.22 +1.2 3,452,691 + PGA1_c32940 0.25 -1.1 3,452,699 - PGA1_c32940 0.26 +0.3 3,452,775 + PGA1_c32940 0.37 +0.7 3,452,825 + PGA1_c32940 0.43 +0.1 3,452,865 - PGA1_c32940 0.49 +0.3 3,452,881 + PGA1_c32940 0.51 -0.4 3,452,899 - PGA1_c32940 0.53 -1.8 3,452,919 - PGA1_c32940 0.56 -0.7 3,453,011 - PGA1_c32940 0.69 -0.2 3,453,033 + PGA1_c32940 0.72 -0.8 3,453,041 - PGA1_c32940 0.73 -1.2 3,453,041 - PGA1_c32940 0.73 +0.2 3,453,081 + PGA1_c32940 0.78 +0.4 3,453,083 + PGA1_c32940 0.78 +0.4 3,453,091 - PGA1_c32940 0.79 -0.2 3,453,091 - PGA1_c32940 0.79 -0.1 3,453,091 - PGA1_c32940 0.79 -0.2 3,453,148 - PGA1_c32940 0.87 -0.5 3,453,184 - +0.1 3,453,195 - -0.3 3,453,233 + +0.5 3,453,271 + +0.5 3,453,322 + -0.5 3,453,434 + -1.8 3,453,436 + -0.8 3,453,441 + -0.3 3,453,455 - +0.0
Or see this region's nucleotide sequence