Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c27890

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c27880 and PGA1_c27890 overlap by 4 nucleotidesPGA1_c27890 and PGA1_c27900 are separated by 24 nucleotidesPGA1_c27900 and PGA1_c27910 overlap by 4 nucleotides PGA1_c27880: PGA1_c27880 - N-acetylglucosamine-6-phosphate deacetylase NagA, at 2,905,905 to 2,907,065 _c27880 PGA1_c27890: PGA1_c27890 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data), at 2,907,062 to 2,908,090 _c27890 PGA1_c27900: PGA1_c27900 - ligand-binding UTRA domain-containing protein, at 2,908,115 to 2,908,873 _c27900 PGA1_c27910: PGA1_c27910 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data), at 2,908,870 to 2,909,772 _c27910 Position (kb) 2907 2908 2909Strain fitness (log2 ratio) -1 0 1 2at 2907.132 kb on + strandat 2907.139 kb on - strandat 2907.227 kb on - strand, within PGA1_c27890at 2907.227 kb on - strand, within PGA1_c27890at 2907.233 kb on - strand, within PGA1_c27890at 2907.248 kb on - strand, within PGA1_c27890at 2907.302 kb on - strand, within PGA1_c27890at 2907.363 kb on + strand, within PGA1_c27890at 2907.371 kb on - strand, within PGA1_c27890at 2907.381 kb on + strand, within PGA1_c27890at 2907.460 kb on + strand, within PGA1_c27890at 2907.473 kb on - strand, within PGA1_c27890at 2907.513 kb on - strand, within PGA1_c27890at 2907.632 kb on + strand, within PGA1_c27890at 2907.655 kb on + strand, within PGA1_c27890at 2907.663 kb on - strand, within PGA1_c27890at 2907.663 kb on - strand, within PGA1_c27890at 2907.663 kb on - strand, within PGA1_c27890at 2907.725 kb on - strand, within PGA1_c27890at 2907.934 kb on - strand, within PGA1_c27890at 2908.034 kb on + strandat 2908.034 kb on + strandat 2908.130 kb on - strandat 2908.176 kb on - strandat 2908.186 kb on - strandat 2908.192 kb on + strand, within PGA1_c27900at 2908.246 kb on + strand, within PGA1_c27900at 2908.353 kb on - strand, within PGA1_c27900at 2908.373 kb on - strand, within PGA1_c27900at 2908.401 kb on - strand, within PGA1_c27900at 2908.444 kb on - strand, within PGA1_c27900at 2908.522 kb on + strand, within PGA1_c27900at 2908.544 kb on - strand, within PGA1_c27900at 2908.704 kb on - strand, within PGA1_c27900at 2908.812 kb on - strandat 2909.065 kb on - strand, within PGA1_c27910at 2909.073 kb on - strand, within PGA1_c27910

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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2,907,132 + -1.0
2,907,139 - -0.5
2,907,227 - PGA1_c27890 0.16 +0.4
2,907,227 - PGA1_c27890 0.16 +0.7
2,907,233 - PGA1_c27890 0.17 +0.2
2,907,248 - PGA1_c27890 0.18 +0.4
2,907,302 - PGA1_c27890 0.23 +1.2
2,907,363 + PGA1_c27890 0.29 +0.1
2,907,371 - PGA1_c27890 0.30 +0.2
2,907,381 + PGA1_c27890 0.31 -0.2
2,907,460 + PGA1_c27890 0.39 +1.4
2,907,473 - PGA1_c27890 0.40 +0.2
2,907,513 - PGA1_c27890 0.44 +1.0
2,907,632 + PGA1_c27890 0.55 +0.3
2,907,655 + PGA1_c27890 0.58 +1.1
2,907,663 - PGA1_c27890 0.58 +1.0
2,907,663 - PGA1_c27890 0.58 +1.3
2,907,663 - PGA1_c27890 0.58 +1.0
2,907,725 - PGA1_c27890 0.64 -0.7
2,907,934 - PGA1_c27890 0.85 +0.8
2,908,034 + +1.2
2,908,034 + +1.8
2,908,130 - +0.2
2,908,176 - +1.7
2,908,186 - -0.4
2,908,192 + PGA1_c27900 0.10 -0.7
2,908,246 + PGA1_c27900 0.17 +0.1
2,908,353 - PGA1_c27900 0.31 +0.6
2,908,373 - PGA1_c27900 0.34 -1.5
2,908,401 - PGA1_c27900 0.38 +0.1
2,908,444 - PGA1_c27900 0.43 -0.3
2,908,522 + PGA1_c27900 0.54 +0.8
2,908,544 - PGA1_c27900 0.57 -0.7
2,908,704 - PGA1_c27900 0.78 +1.6
2,908,812 - +1.3
2,909,065 - PGA1_c27910 0.22 -0.1
2,909,073 - PGA1_c27910 0.22 -0.4

Or see this region's nucleotide sequence