Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c27880 and PGA1_c27890 overlap by 4 nucleotides PGA1_c27890 and PGA1_c27900 are separated by 24 nucleotides PGA1_c27900 and PGA1_c27910 overlap by 4 nucleotides
PGA1_c27880: PGA1_c27880 - N-acetylglucosamine-6-phosphate deacetylase NagA, at 2,905,905 to 2,907,065
_c27880
PGA1_c27890: PGA1_c27890 - Glucosamine-6-phosphate deaminase [isomerizing], alternative (EC 3.5.99.6) (from data) , at 2,907,062 to 2,908,090
_c27890
PGA1_c27900: PGA1_c27900 - ligand-binding UTRA domain-containing protein, at 2,908,115 to 2,908,873
_c27900
PGA1_c27910: PGA1_c27910 - N-acetylglucosamine kinase (EC 2.7.1.59) (from data) , at 2,908,870 to 2,909,772
_c27910
Position (kb)
2907
2908
2909 Strain fitness (log2 ratio)
-1
0
1
2 at 2907.132 kb on + strand at 2907.139 kb on - strand at 2907.227 kb on - strand, within PGA1_c27890 at 2907.227 kb on - strand, within PGA1_c27890 at 2907.233 kb on - strand, within PGA1_c27890 at 2907.248 kb on - strand, within PGA1_c27890 at 2907.302 kb on - strand, within PGA1_c27890 at 2907.363 kb on + strand, within PGA1_c27890 at 2907.371 kb on - strand, within PGA1_c27890 at 2907.381 kb on + strand, within PGA1_c27890 at 2907.460 kb on + strand, within PGA1_c27890 at 2907.473 kb on - strand, within PGA1_c27890 at 2907.513 kb on - strand, within PGA1_c27890 at 2907.632 kb on + strand, within PGA1_c27890 at 2907.655 kb on + strand, within PGA1_c27890 at 2907.663 kb on - strand, within PGA1_c27890 at 2907.663 kb on - strand, within PGA1_c27890 at 2907.663 kb on - strand, within PGA1_c27890 at 2907.725 kb on - strand, within PGA1_c27890 at 2907.934 kb on - strand, within PGA1_c27890 at 2908.034 kb on + strand at 2908.034 kb on + strand at 2908.130 kb on - strand at 2908.176 kb on - strand at 2908.186 kb on - strand at 2908.192 kb on + strand, within PGA1_c27900 at 2908.246 kb on + strand, within PGA1_c27900 at 2908.353 kb on - strand, within PGA1_c27900 at 2908.373 kb on - strand, within PGA1_c27900 at 2908.401 kb on - strand, within PGA1_c27900 at 2908.444 kb on - strand, within PGA1_c27900 at 2908.522 kb on + strand, within PGA1_c27900 at 2908.544 kb on - strand, within PGA1_c27900 at 2908.704 kb on - strand, within PGA1_c27900 at 2908.812 kb on - strand at 2909.065 kb on - strand, within PGA1_c27910 at 2909.073 kb on - strand, within PGA1_c27910
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 2,907,132 + -1.0 2,907,139 - -0.5 2,907,227 - PGA1_c27890 0.16 +0.4 2,907,227 - PGA1_c27890 0.16 +0.7 2,907,233 - PGA1_c27890 0.17 +0.2 2,907,248 - PGA1_c27890 0.18 +0.4 2,907,302 - PGA1_c27890 0.23 +1.2 2,907,363 + PGA1_c27890 0.29 +0.1 2,907,371 - PGA1_c27890 0.30 +0.2 2,907,381 + PGA1_c27890 0.31 -0.2 2,907,460 + PGA1_c27890 0.39 +1.4 2,907,473 - PGA1_c27890 0.40 +0.2 2,907,513 - PGA1_c27890 0.44 +1.0 2,907,632 + PGA1_c27890 0.55 +0.3 2,907,655 + PGA1_c27890 0.58 +1.1 2,907,663 - PGA1_c27890 0.58 +1.0 2,907,663 - PGA1_c27890 0.58 +1.3 2,907,663 - PGA1_c27890 0.58 +1.0 2,907,725 - PGA1_c27890 0.64 -0.7 2,907,934 - PGA1_c27890 0.85 +0.8 2,908,034 + +1.2 2,908,034 + +1.8 2,908,130 - +0.2 2,908,176 - +1.7 2,908,186 - -0.4 2,908,192 + PGA1_c27900 0.10 -0.7 2,908,246 + PGA1_c27900 0.17 +0.1 2,908,353 - PGA1_c27900 0.31 +0.6 2,908,373 - PGA1_c27900 0.34 -1.5 2,908,401 - PGA1_c27900 0.38 +0.1 2,908,444 - PGA1_c27900 0.43 -0.3 2,908,522 + PGA1_c27900 0.54 +0.8 2,908,544 - PGA1_c27900 0.57 -0.7 2,908,704 - PGA1_c27900 0.78 +1.6 2,908,812 - +1.3 2,909,065 - PGA1_c27910 0.22 -0.1 2,909,073 - PGA1_c27910 0.22 -0.4
Or see this region's nucleotide sequence