Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c02030 and PGA1_c02040 overlap by 4 nucleotides PGA1_c02040 and PGA1_c02050 are separated by 199 nucleotides PGA1_c02050 and PGA1_c02060 are separated by 224 nucleotides
PGA1_c02030: PGA1_c02030 - phosphoglycerate mutase-like protein, at 185,912 to 186,409
_c02030
PGA1_c02040: PGA1_c02040 - hypothetical protein, at 186,406 to 187,149
_c02040
PGA1_c02050: PGA1_c02050 - acetylglutamate kinase ArgB, at 187,349 to 188,209
_c02050
PGA1_c02060: PGA1_c02060 - short-chain dehydrogenase / reductase, at 188,434 to 189,162
_c02060
Position (kb) 187
188
189 Strain fitness (log2 ratio) -1
0
1
2 at 186.353 kb on + strand, within PGA1_c02030 at 186.391 kb on + strand at 186.457 kb on + strand at 186.527 kb on + strand, within PGA1_c02040 at 186.535 kb on - strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.610 kb on + strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.618 kb on - strand, within PGA1_c02040 at 186.625 kb on + strand, within PGA1_c02040 at 186.651 kb on - strand, within PGA1_c02040 at 186.651 kb on - strand, within PGA1_c02040 at 186.656 kb on - strand, within PGA1_c02040 at 186.769 kb on - strand, within PGA1_c02040 at 186.779 kb on - strand, within PGA1_c02040 at 186.871 kb on + strand, within PGA1_c02040 at 186.903 kb on + strand, within PGA1_c02040 at 186.903 kb on + strand, within PGA1_c02040 at 186.997 kb on - strand, within PGA1_c02040 at 186.999 kb on + strand, within PGA1_c02040 at 187.005 kb on + strand, within PGA1_c02040 at 187.007 kb on + strand, within PGA1_c02040 at 187.013 kb on - strand, within PGA1_c02040 at 187.144 kb on + strand at 187.193 kb on + strand at 187.193 kb on + strand at 187.193 kb on + strand at 187.193 kb on - strand at 187.225 kb on + strand at 187.244 kb on - strand at 187.347 kb on + strand at 187.355 kb on - strand at 187.355 kb on - strand at 187.446 kb on + strand, within PGA1_c02050 at 187.454 kb on - strand, within PGA1_c02050 at 187.707 kb on + strand, within PGA1_c02050 at 187.707 kb on + strand, within PGA1_c02050 at 187.772 kb on + strand, within PGA1_c02050 at 187.897 kb on - strand, within PGA1_c02050 at 188.020 kb on + strand, within PGA1_c02050 at 188.028 kb on - strand, within PGA1_c02050 at 188.033 kb on - strand, within PGA1_c02050 at 188.064 kb on + strand, within PGA1_c02050 at 188.162 kb on + strand at 188.162 kb on + strand at 188.219 kb on + strand at 188.219 kb on + strand at 188.219 kb on + strand at 188.219 kb on + strand at 188.224 kb on + strand at 188.227 kb on - strand at 188.227 kb on - strand at 188.227 kb on - strand at 188.227 kb on - strand at 188.263 kb on + strand at 188.274 kb on + strand at 188.279 kb on + strand at 188.279 kb on + strand at 188.279 kb on + strand at 188.287 kb on - strand at 188.293 kb on + strand at 188.318 kb on - strand at 188.320 kb on - strand at 188.355 kb on - strand at 188.412 kb on + strand at 188.418 kb on + strand at 188.470 kb on - strand at 188.499 kb on + strand at 188.499 kb on + strand at 188.499 kb on - strand at 188.529 kb on - strand, within PGA1_c02060 at 188.541 kb on + strand, within PGA1_c02060 at 188.549 kb on - strand, within PGA1_c02060 at 188.565 kb on + strand, within PGA1_c02060 at 188.596 kb on + strand, within PGA1_c02060 at 188.673 kb on + strand, within PGA1_c02060 at 188.796 kb on - strand, within PGA1_c02060 at 188.869 kb on + strand, within PGA1_c02060 at 188.892 kb on - strand, within PGA1_c02060 at 188.898 kb on - strand, within PGA1_c02060 at 188.920 kb on + strand, within PGA1_c02060 at 188.999 kb on - strand, within PGA1_c02060 at 188.999 kb on - strand, within PGA1_c02060 at 189.048 kb on + strand, within PGA1_c02060 at 189.111 kb on - strand at 189.154 kb on - strand at 189.168 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 186,353 + PGA1_c02030 0.89 -0.7 186,391 + +0.4 186,457 + -0.6 186,527 + PGA1_c02040 0.16 -1.1 186,535 - PGA1_c02040 0.17 +0.4 186,610 + PGA1_c02040 0.27 +0.9 186,610 + PGA1_c02040 0.27 -0.7 186,610 + PGA1_c02040 0.27 -0.5 186,618 - PGA1_c02040 0.28 +0.4 186,618 - PGA1_c02040 0.28 -0.7 186,618 - PGA1_c02040 0.28 -0.9 186,625 + PGA1_c02040 0.29 -0.1 186,651 - PGA1_c02040 0.33 -0.6 186,651 - PGA1_c02040 0.33 +0.1 186,656 - PGA1_c02040 0.34 -0.1 186,769 - PGA1_c02040 0.49 +0.6 186,779 - PGA1_c02040 0.50 +0.0 186,871 + PGA1_c02040 0.62 -0.5 186,903 + PGA1_c02040 0.67 +0.2 186,903 + PGA1_c02040 0.67 +0.7 186,997 - PGA1_c02040 0.79 +1.0 186,999 + PGA1_c02040 0.80 -0.6 187,005 + PGA1_c02040 0.81 +0.5 187,007 + PGA1_c02040 0.81 -0.3 187,013 - PGA1_c02040 0.82 -0.8 187,144 + -0.7 187,193 + +1.1 187,193 + +0.2 187,193 + +0.1 187,193 - -0.2 187,225 + -0.8 187,244 - +0.3 187,347 + -0.0 187,355 - +0.9 187,355 - -1.7 187,446 + PGA1_c02050 0.11 +1.1 187,454 - PGA1_c02050 0.12 +1.4 187,707 + PGA1_c02050 0.42 +1.4 187,707 + PGA1_c02050 0.42 -0.3 187,772 + PGA1_c02050 0.49 +1.1 187,897 - PGA1_c02050 0.64 -0.1 188,020 + PGA1_c02050 0.78 +2.1 188,028 - PGA1_c02050 0.79 -0.1 188,033 - PGA1_c02050 0.79 +1.2 188,064 + PGA1_c02050 0.83 +0.7 188,162 + +1.3 188,162 + +1.3 188,219 + +0.2 188,219 + -0.5 188,219 + +1.2 188,219 + +0.4 188,224 + -0.7 188,227 - +0.4 188,227 - -0.5 188,227 - +0.4 188,227 - -0.2 188,263 + +0.0 188,274 + -0.2 188,279 + -0.6 188,279 + +0.4 188,279 + +1.1 188,287 - -0.4 188,293 + -0.2 188,318 - +0.5 188,320 - -0.2 188,355 - +0.0 188,412 + -0.4 188,418 + +0.2 188,470 - -0.2 188,499 + +0.7 188,499 + -0.2 188,499 - +0.2 188,529 - PGA1_c02060 0.13 -0.5 188,541 + PGA1_c02060 0.15 +0.3 188,549 - PGA1_c02060 0.16 -0.6 188,565 + PGA1_c02060 0.18 +0.1 188,596 + PGA1_c02060 0.22 -0.0 188,673 + PGA1_c02060 0.33 -1.2 188,796 - PGA1_c02060 0.50 -0.1 188,869 + PGA1_c02060 0.60 +0.4 188,892 - PGA1_c02060 0.63 -0.2 188,898 - PGA1_c02060 0.64 +0.2 188,920 + PGA1_c02060 0.67 +0.1 188,999 - PGA1_c02060 0.78 -0.9 188,999 - PGA1_c02060 0.78 -0.7 189,048 + PGA1_c02060 0.84 -0.5 189,111 - -1.2 189,154 - +0.7 189,168 + -0.4
Or see this region's nucleotide sequence