Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c17770 and PGA1_c17780 are separated by 13 nucleotides PGA1_c17780 and PGA1_c17790 are separated by 101 nucleotides PGA1_c17790 and PGA1_c17800 overlap by 4 nucleotides PGA1_c17800 and PGA1_c17810 overlap by 4 nucleotides PGA1_c17810 and PGA1_c17820 are separated by 176 nucleotides
PGA1_c17770: PGA1_c17770 - Protein of unknown function (DUF3356)., at 1,860,400 to 1,860,804
_c17770
PGA1_c17780: PGA1_c17780 - putative gene transfer agent major tail protein, at 1,860,818 to 1,861,231
_c17780
PGA1_c17790: PGA1_c17790 - putative gene transfer agent protein, at 1,861,333 to 1,861,740
_c17790
PGA1_c17800: PGA1_c17800 - putative gene transfer agent head-tail adaptor, at 1,861,737 to 1,862,108
_c17800
PGA1_c17810: PGA1_c17810 - putative gene transfer agent protein, at 1,862,105 to 1,862,755
_c17810
PGA1_c17820: PGA1_c17820 - gene transfer agent major capsid protein, at 1,862,932 to 1,864,116
_c17820
Position (kb) 1861
1862
1863 Strain fitness (log2 ratio) -2
-1
0
1 at 1860.760 kb on - strand, within PGA1_c17770 at 1860.789 kb on + strand at 1860.797 kb on - strand at 1860.797 kb on - strand at 1860.797 kb on - strand at 1860.870 kb on - strand, within PGA1_c17780 at 1860.913 kb on + strand, within PGA1_c17780 at 1860.913 kb on + strand, within PGA1_c17780 at 1860.913 kb on + strand, within PGA1_c17780 at 1861.011 kb on - strand, within PGA1_c17780 at 1861.011 kb on - strand, within PGA1_c17780 at 1861.040 kb on + strand, within PGA1_c17780 at 1861.057 kb on + strand, within PGA1_c17780 at 1861.065 kb on - strand, within PGA1_c17780 at 1861.075 kb on + strand, within PGA1_c17780 at 1861.114 kb on - strand, within PGA1_c17780 at 1861.161 kb on - strand, within PGA1_c17780 at 1861.280 kb on + strand at 1861.280 kb on + strand at 1861.283 kb on - strand at 1861.315 kb on + strand at 1861.398 kb on - strand, within PGA1_c17790 at 1861.436 kb on - strand, within PGA1_c17790 at 1861.669 kb on + strand, within PGA1_c17790 at 1861.693 kb on - strand, within PGA1_c17790 at 1861.722 kb on + strand at 1861.728 kb on + strand at 1861.729 kb on + strand at 1861.736 kb on - strand at 1861.792 kb on + strand, within PGA1_c17800 at 1861.936 kb on + strand, within PGA1_c17800 at 1862.055 kb on + strand, within PGA1_c17800 at 1862.172 kb on - strand, within PGA1_c17810 at 1862.187 kb on + strand, within PGA1_c17810 at 1862.294 kb on + strand, within PGA1_c17810 at 1862.335 kb on - strand, within PGA1_c17810 at 1862.458 kb on + strand, within PGA1_c17810 at 1862.540 kb on + strand, within PGA1_c17810 at 1862.544 kb on - strand, within PGA1_c17810 at 1862.656 kb on - strand, within PGA1_c17810 at 1862.716 kb on - strand at 1862.784 kb on - strand at 1862.784 kb on - strand at 1862.810 kb on + strand at 1862.817 kb on - strand at 1862.876 kb on - strand at 1862.897 kb on + strand at 1863.027 kb on - strand at 1863.062 kb on - strand, within PGA1_c17820 at 1863.081 kb on - strand, within PGA1_c17820 at 1863.105 kb on + strand, within PGA1_c17820
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,860,760 - PGA1_c17770 0.89 +0.1 1,860,789 + -0.1 1,860,797 - +0.6 1,860,797 - -0.4 1,860,797 - -0.8 1,860,870 - PGA1_c17780 0.13 -0.2 1,860,913 + PGA1_c17780 0.23 +1.0 1,860,913 + PGA1_c17780 0.23 +0.1 1,860,913 + PGA1_c17780 0.23 +0.3 1,861,011 - PGA1_c17780 0.47 -0.3 1,861,011 - PGA1_c17780 0.47 -0.4 1,861,040 + PGA1_c17780 0.54 -1.0 1,861,057 + PGA1_c17780 0.58 +0.5 1,861,065 - PGA1_c17780 0.60 -1.8 1,861,075 + PGA1_c17780 0.62 -0.2 1,861,114 - PGA1_c17780 0.71 -0.3 1,861,161 - PGA1_c17780 0.83 -0.2 1,861,280 + -0.5 1,861,280 + -0.6 1,861,283 - +0.7 1,861,315 + +0.4 1,861,398 - PGA1_c17790 0.16 +0.4 1,861,436 - PGA1_c17790 0.25 -0.4 1,861,669 + PGA1_c17790 0.82 +0.4 1,861,693 - PGA1_c17790 0.88 -1.1 1,861,722 + +0.7 1,861,728 + -0.2 1,861,729 + -0.3 1,861,736 - -0.9 1,861,792 + PGA1_c17800 0.15 -0.6 1,861,936 + PGA1_c17800 0.53 +0.1 1,862,055 + PGA1_c17800 0.85 -1.2 1,862,172 - PGA1_c17810 0.10 -0.2 1,862,187 + PGA1_c17810 0.13 -1.1 1,862,294 + PGA1_c17810 0.29 -0.1 1,862,335 - PGA1_c17810 0.35 +0.1 1,862,458 + PGA1_c17810 0.54 -0.4 1,862,540 + PGA1_c17810 0.67 -0.1 1,862,544 - PGA1_c17810 0.67 -0.9 1,862,656 - PGA1_c17810 0.85 -0.1 1,862,716 - -0.5 1,862,784 - -1.7 1,862,784 - -0.6 1,862,810 + -0.9 1,862,817 - +1.3 1,862,876 - -0.0 1,862,897 + -0.2 1,863,027 - -0.2 1,863,062 - PGA1_c17820 0.11 +0.4 1,863,081 - PGA1_c17820 0.13 +0.6 1,863,105 + PGA1_c17820 0.15 +0.6
Or see this region's nucleotide sequence