Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c17210

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c17190 and PGA1_c17200 are separated by 133 nucleotidesPGA1_c17200 and PGA1_c17210 are separated by 76 nucleotidesPGA1_c17210 and PGA1_c17220 overlap by 1 nucleotides PGA1_c17190: PGA1_c17190 - Predicted membrane protein, at 1,793,829 to 1,794,509 _c17190 PGA1_c17200: PGA1_c17200 - transcriptional regulator, TetR family, at 1,794,643 to 1,795,119 _c17200 PGA1_c17210: PGA1_c17210 - cell division protein ZapA-like protein, at 1,795,196 to 1,795,594 _c17210 PGA1_c17220: PGA1_c17220 - hypothetical protein, at 1,795,594 to 1,796,622 _c17220 Position (kb) 1795 1796Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1794.264 kb on + strand, within PGA1_c17190at 1794.279 kb on - strand, within PGA1_c17190at 1794.281 kb on + strand, within PGA1_c17190at 1794.286 kb on + strand, within PGA1_c17190at 1794.289 kb on - strand, within PGA1_c17190at 1794.292 kb on + strand, within PGA1_c17190at 1794.292 kb on + strand, within PGA1_c17190at 1794.294 kb on - strand, within PGA1_c17190at 1794.373 kb on + strand, within PGA1_c17190at 1794.377 kb on - strand, within PGA1_c17190at 1794.424 kb on + strand, within PGA1_c17190at 1794.438 kb on - strand, within PGA1_c17190at 1794.455 kb on - strandat 1794.470 kb on + strandat 1794.470 kb on + strandat 1794.604 kb on - strandat 1794.608 kb on - strandat 1794.668 kb on + strandat 1794.754 kb on + strand, within PGA1_c17200at 1794.762 kb on - strand, within PGA1_c17200at 1794.762 kb on - strand, within PGA1_c17200at 1794.765 kb on + strand, within PGA1_c17200at 1794.839 kb on - strand, within PGA1_c17200at 1794.978 kb on - strand, within PGA1_c17200at 1795.152 kb on - strandat 1795.152 kb on - strandat 1795.476 kb on + strand, within PGA1_c17210at 1795.527 kb on - strand, within PGA1_c17210at 1795.537 kb on - strand, within PGA1_c17210at 1795.552 kb on + strand, within PGA1_c17210at 1795.726 kb on + strand, within PGA1_c17220at 1795.749 kb on + strand, within PGA1_c17220at 1795.767 kb on - strand, within PGA1_c17220at 1795.767 kb on - strand, within PGA1_c17220at 1795.777 kb on - strand, within PGA1_c17220at 1795.898 kb on - strand, within PGA1_c17220at 1796.156 kb on + strand, within PGA1_c17220at 1796.382 kb on + strand, within PGA1_c17220at 1796.382 kb on + strand, within PGA1_c17220at 1796.390 kb on - strand, within PGA1_c17220at 1796.441 kb on + strand, within PGA1_c17220at 1796.458 kb on + strand, within PGA1_c17220at 1796.466 kb on - strand, within PGA1_c17220at 1796.503 kb on - strand, within PGA1_c17220at 1796.523 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,794,264 + PGA1_c17190 0.64 -0.1
1,794,279 - PGA1_c17190 0.66 +0.2
1,794,281 + PGA1_c17190 0.66 -1.0
1,794,286 + PGA1_c17190 0.67 +1.0
1,794,289 - PGA1_c17190 0.68 +0.4
1,794,292 + PGA1_c17190 0.68 +0.5
1,794,292 + PGA1_c17190 0.68 +0.8
1,794,294 - PGA1_c17190 0.68 +0.0
1,794,373 + PGA1_c17190 0.80 -0.1
1,794,377 - PGA1_c17190 0.80 -0.4
1,794,424 + PGA1_c17190 0.87 -1.2
1,794,438 - PGA1_c17190 0.89 +0.0
1,794,455 - -0.5
1,794,470 + -0.3
1,794,470 + +0.5
1,794,604 - -0.0
1,794,608 - +0.3
1,794,668 + +0.8
1,794,754 + PGA1_c17200 0.23 +0.3
1,794,762 - PGA1_c17200 0.25 -0.5
1,794,762 - PGA1_c17200 0.25 +0.0
1,794,765 + PGA1_c17200 0.26 -0.7
1,794,839 - PGA1_c17200 0.41 -0.5
1,794,978 - PGA1_c17200 0.70 -0.2
1,795,152 - +0.9
1,795,152 - +0.1
1,795,476 + PGA1_c17210 0.70 -0.9
1,795,527 - PGA1_c17210 0.83 -0.1
1,795,537 - PGA1_c17210 0.85 -0.1
1,795,552 + PGA1_c17210 0.89 -2.6
1,795,726 + PGA1_c17220 0.13 -0.4
1,795,749 + PGA1_c17220 0.15 -2.8
1,795,767 - PGA1_c17220 0.17 -0.1
1,795,767 - PGA1_c17220 0.17 -1.0
1,795,777 - PGA1_c17220 0.18 -0.9
1,795,898 - PGA1_c17220 0.30 -0.7
1,796,156 + PGA1_c17220 0.55 -2.2
1,796,382 + PGA1_c17220 0.77 -2.9
1,796,382 + PGA1_c17220 0.77 +0.8
1,796,390 - PGA1_c17220 0.77 -0.5
1,796,441 + PGA1_c17220 0.82 +1.8
1,796,458 + PGA1_c17220 0.84 +0.2
1,796,466 - PGA1_c17220 0.85 -1.0
1,796,503 - PGA1_c17220 0.88 -0.6
1,796,523 + -0.7

Or see this region's nucleotide sequence