Strain Fitness in Phaeobacter inhibens DSM 17395 around PGA1_c13750

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPGA1_c13740 and PGA1_c13750 are separated by 36 nucleotidesPGA1_c13750 and PGA1_c13760 overlap by 4 nucleotides PGA1_c13740: PGA1_c13740 - long-chain-fatty-acid- CoA ligase IcfB, at 1,418,546 to 1,420,147 _c13740 PGA1_c13750: PGA1_c13750 - phosphopantetheine binding protein, at 1,420,184 to 1,420,447 _c13750 PGA1_c13760: PGA1_c13760 - D-alanine--poly(phosphoribitol) ligase subunit, at 1,420,444 to 1,422,048 _c13760 Position (kb) 1420 1421Strain fitness (log2 ratio) -3 -2 -1 0 1at 1419.197 kb on - strand, within PGA1_c13740at 1419.222 kb on - strand, within PGA1_c13740at 1419.246 kb on + strand, within PGA1_c13740at 1419.254 kb on - strand, within PGA1_c13740at 1419.387 kb on - strand, within PGA1_c13740at 1419.407 kb on + strand, within PGA1_c13740at 1419.420 kb on + strand, within PGA1_c13740at 1419.449 kb on + strand, within PGA1_c13740at 1419.452 kb on - strand, within PGA1_c13740at 1419.477 kb on - strand, within PGA1_c13740at 1419.492 kb on + strand, within PGA1_c13740at 1419.492 kb on + strand, within PGA1_c13740at 1419.495 kb on - strand, within PGA1_c13740at 1419.500 kb on - strand, within PGA1_c13740at 1419.501 kb on - strand, within PGA1_c13740at 1419.532 kb on + strand, within PGA1_c13740at 1419.642 kb on - strand, within PGA1_c13740at 1419.653 kb on - strand, within PGA1_c13740at 1419.704 kb on + strand, within PGA1_c13740at 1419.710 kb on - strand, within PGA1_c13740at 1419.717 kb on - strand, within PGA1_c13740at 1419.768 kb on + strand, within PGA1_c13740at 1419.776 kb on - strand, within PGA1_c13740at 1419.807 kb on + strand, within PGA1_c13740at 1419.815 kb on - strand, within PGA1_c13740at 1419.815 kb on - strand, within PGA1_c13740at 1419.817 kb on + strand, within PGA1_c13740at 1419.839 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.908 kb on + strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.916 kb on - strand, within PGA1_c13740at 1419.918 kb on + strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1419.926 kb on - strand, within PGA1_c13740at 1420.007 kb on - strandat 1420.019 kb on + strandat 1420.134 kb on - strandat 1420.136 kb on + strandat 1420.138 kb on - strandat 1420.142 kb on + strandat 1420.152 kb on + strandat 1420.152 kb on + strandat 1420.152 kb on + strandat 1420.152 kb on + strandat 1420.152 kb on + strandat 1420.160 kb on - strandat 1420.165 kb on - strandat 1420.182 kb on - strandat 1420.182 kb on - strandat 1420.201 kb on + strandat 1420.201 kb on + strandat 1420.259 kb on + strand, within PGA1_c13750at 1420.259 kb on + strand, within PGA1_c13750at 1420.267 kb on - strand, within PGA1_c13750at 1420.315 kb on + strand, within PGA1_c13750at 1420.315 kb on + strand, within PGA1_c13750at 1420.315 kb on + strand, within PGA1_c13750at 1420.323 kb on - strand, within PGA1_c13750at 1420.374 kb on - strand, within PGA1_c13750at 1420.420 kb on - strand, within PGA1_c13750at 1420.475 kb on + strandat 1420.475 kb on + strandat 1420.483 kb on - strandat 1420.483 kb on - strandat 1420.483 kb on - strandat 1420.522 kb on + strandat 1420.566 kb on - strandat 1420.582 kb on + strandat 1420.590 kb on - strandat 1420.620 kb on + strand, within PGA1_c13760at 1420.620 kb on + strand, within PGA1_c13760at 1420.620 kb on + strand, within PGA1_c13760at 1420.628 kb on - strand, within PGA1_c13760at 1420.628 kb on - strand, within PGA1_c13760at 1420.628 kb on - strand, within PGA1_c13760at 1420.674 kb on - strand, within PGA1_c13760at 1420.686 kb on + strand, within PGA1_c13760at 1420.686 kb on - strand, within PGA1_c13760at 1420.715 kb on + strand, within PGA1_c13760at 1420.717 kb on - strand, within PGA1_c13760at 1420.773 kb on - strand, within PGA1_c13760at 1420.781 kb on + strand, within PGA1_c13760at 1420.781 kb on + strand, within PGA1_c13760at 1420.781 kb on - strand, within PGA1_c13760at 1420.782 kb on + strand, within PGA1_c13760at 1420.791 kb on + strand, within PGA1_c13760at 1420.792 kb on - strand, within PGA1_c13760at 1420.829 kb on - strand, within PGA1_c13760at 1420.867 kb on + strand, within PGA1_c13760at 1420.893 kb on + strand, within PGA1_c13760at 1420.918 kb on - strand, within PGA1_c13760at 1420.941 kb on - strand, within PGA1_c13760at 1420.964 kb on + strand, within PGA1_c13760at 1420.972 kb on - strand, within PGA1_c13760at 1420.972 kb on - strand, within PGA1_c13760at 1420.974 kb on + strand, within PGA1_c13760at 1420.974 kb on + strand, within PGA1_c13760at 1420.974 kb on + strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strandat 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.982 kb on - strand, within PGA1_c13760at 1420.988 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.024 kb on + strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.032 kb on - strand, within PGA1_c13760at 1421.034 kb on + strand, within PGA1_c13760at 1421.042 kb on - strand, within PGA1_c13760at 1421.087 kb on + strand, within PGA1_c13760at 1421.095 kb on - strand, within PGA1_c13760at 1421.095 kb on - strand, within PGA1_c13760at 1421.136 kb on + strand, within PGA1_c13760at 1421.146 kb on + strand, within PGA1_c13760at 1421.146 kb on + strand, within PGA1_c13760at 1421.187 kb on - strand, within PGA1_c13760at 1421.205 kb on + strand, within PGA1_c13760at 1421.208 kb on - strand, within PGA1_c13760at 1421.221 kb on - strand, within PGA1_c13760at 1421.229 kb on - strand, within PGA1_c13760at 1421.273 kb on - strand, within PGA1_c13760at 1421.273 kb on - strand, within PGA1_c13760at 1421.292 kb on + strand, within PGA1_c13760at 1421.305 kb on - strand, within PGA1_c13760at 1421.317 kb on + strand, within PGA1_c13760at 1421.325 kb on - strand, within PGA1_c13760at 1421.367 kb on - strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.381 kb on + strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.389 kb on - strand, within PGA1_c13760at 1421.396 kb on + strand, within PGA1_c13760at 1421.396 kb on + strand, within PGA1_c13760at 1421.396 kb on + strand, within PGA1_c13760at 1421.396 kb on + strand, within PGA1_c13760at 1421.404 kb on - strand, within PGA1_c13760at 1421.404 kb on - strand, within PGA1_c13760at 1421.422 kb on - strand, within PGA1_c13760

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,419,197 - PGA1_c13740 0.41 +0.0
1,419,222 - PGA1_c13740 0.42 -0.1
1,419,246 + PGA1_c13740 0.44 +0.9
1,419,254 - PGA1_c13740 0.44 +0.3
1,419,387 - PGA1_c13740 0.52 +0.3
1,419,407 + PGA1_c13740 0.54 -0.5
1,419,420 + PGA1_c13740 0.55 -0.3
1,419,449 + PGA1_c13740 0.56 -0.1
1,419,452 - PGA1_c13740 0.57 +0.0
1,419,477 - PGA1_c13740 0.58 +1.2
1,419,492 + PGA1_c13740 0.59 -0.2
1,419,492 + PGA1_c13740 0.59 -0.5
1,419,495 - PGA1_c13740 0.59 +0.5
1,419,500 - PGA1_c13740 0.60 +0.3
1,419,501 - PGA1_c13740 0.60 -0.3
1,419,532 + PGA1_c13740 0.62 +0.1
1,419,642 - PGA1_c13740 0.68 +1.1
1,419,653 - PGA1_c13740 0.69 -0.1
1,419,704 + PGA1_c13740 0.72 +0.4
1,419,710 - PGA1_c13740 0.73 -0.3
1,419,717 - PGA1_c13740 0.73 -0.1
1,419,768 + PGA1_c13740 0.76 -0.9
1,419,776 - PGA1_c13740 0.77 -0.6
1,419,807 + PGA1_c13740 0.79 -0.0
1,419,815 - PGA1_c13740 0.79 +0.9
1,419,815 - PGA1_c13740 0.79 -1.0
1,419,817 + PGA1_c13740 0.79 +0.2
1,419,839 + PGA1_c13740 0.81 +0.2
1,419,908 + PGA1_c13740 0.85 -0.2
1,419,908 + PGA1_c13740 0.85 +0.1
1,419,908 + PGA1_c13740 0.85 +0.0
1,419,908 + PGA1_c13740 0.85 +0.3
1,419,908 + PGA1_c13740 0.85 -0.1
1,419,908 + PGA1_c13740 0.85 -0.0
1,419,908 + PGA1_c13740 0.85 -0.4
1,419,908 + PGA1_c13740 0.85 -0.0
1,419,916 - PGA1_c13740 0.86 +0.2
1,419,916 - PGA1_c13740 0.86 +0.1
1,419,916 - PGA1_c13740 0.86 -3.1
1,419,916 - PGA1_c13740 0.86 +0.5
1,419,916 - PGA1_c13740 0.86 -0.7
1,419,916 - PGA1_c13740 0.86 +0.1
1,419,916 - PGA1_c13740 0.86 -0.5
1,419,916 - PGA1_c13740 0.86 +0.2
1,419,916 - PGA1_c13740 0.86 -0.2
1,419,916 - PGA1_c13740 0.86 -0.4
1,419,916 - PGA1_c13740 0.86 -0.1
1,419,916 - PGA1_c13740 0.86 +0.4
1,419,916 - PGA1_c13740 0.86 -1.2
1,419,918 + PGA1_c13740 0.86 +0.2
1,419,926 - PGA1_c13740 0.86 -0.1
1,419,926 - PGA1_c13740 0.86 +0.5
1,419,926 - PGA1_c13740 0.86 +0.5
1,419,926 - PGA1_c13740 0.86 -0.0
1,419,926 - PGA1_c13740 0.86 -0.2
1,419,926 - PGA1_c13740 0.86 +0.1
1,419,926 - PGA1_c13740 0.86 +0.1
1,420,007 - +0.5
1,420,019 + +0.1
1,420,134 - +0.6
1,420,136 + +0.3
1,420,138 - +0.2
1,420,142 + -0.6
1,420,152 + -0.4
1,420,152 + +0.4
1,420,152 + +0.4
1,420,152 + +0.5
1,420,152 + +0.2
1,420,160 - +0.8
1,420,165 - -0.5
1,420,182 - -1.3
1,420,182 - -0.6
1,420,201 + -0.0
1,420,201 + +1.2
1,420,259 + PGA1_c13750 0.28 -0.6
1,420,259 + PGA1_c13750 0.28 +0.9
1,420,267 - PGA1_c13750 0.31 -0.0
1,420,315 + PGA1_c13750 0.50 +0.8
1,420,315 + PGA1_c13750 0.50 +0.8
1,420,315 + PGA1_c13750 0.50 +0.3
1,420,323 - PGA1_c13750 0.53 +0.6
1,420,374 - PGA1_c13750 0.72 -0.0
1,420,420 - PGA1_c13750 0.89 +1.0
1,420,475 + -2.0
1,420,475 + +0.2
1,420,483 - +0.4
1,420,483 - +0.2
1,420,483 - +0.3
1,420,522 + -0.7
1,420,566 - +0.9
1,420,582 + -0.3
1,420,590 - +1.0
1,420,620 + PGA1_c13760 0.11 +0.3
1,420,620 + PGA1_c13760 0.11 +0.7
1,420,620 + PGA1_c13760 0.11 -0.5
1,420,628 - PGA1_c13760 0.11 -0.6
1,420,628 - PGA1_c13760 0.11 +0.4
1,420,628 - PGA1_c13760 0.11 +0.2
1,420,674 - PGA1_c13760 0.14 -0.3
1,420,686 + PGA1_c13760 0.15 -0.0
1,420,686 - PGA1_c13760 0.15 -0.4
1,420,715 + PGA1_c13760 0.17 -0.1
1,420,717 - PGA1_c13760 0.17 +0.5
1,420,773 - PGA1_c13760 0.20 +0.6
1,420,781 + PGA1_c13760 0.21 +0.4
1,420,781 + PGA1_c13760 0.21 +0.5
1,420,781 - PGA1_c13760 0.21 -0.4
1,420,782 + PGA1_c13760 0.21 -0.1
1,420,791 + PGA1_c13760 0.22 +0.1
1,420,792 - PGA1_c13760 0.22 +0.8
1,420,829 - PGA1_c13760 0.24 -0.4
1,420,867 + PGA1_c13760 0.26 -1.2
1,420,893 + PGA1_c13760 0.28 -1.4
1,420,918 - PGA1_c13760 0.30 +1.0
1,420,941 - PGA1_c13760 0.31 +1.5
1,420,964 + PGA1_c13760 0.32 +0.4
1,420,972 - PGA1_c13760 0.33 -1.1
1,420,972 - PGA1_c13760 0.33 -0.7
1,420,974 + PGA1_c13760 0.33 +0.0
1,420,974 + PGA1_c13760 0.33 -0.2
1,420,974 + PGA1_c13760 0.33 -1.5
1,420,982 - PGA1_c13760 0.34 +0.4
1,420,982 - PGA1_c13760 0.34 +0.4
1,420,982 - PGA1_c13760 0.34 -0.6
1,420,982 - PGA1_c13760 0.34 -0.0
1,420,982 - PGA1_c13760 0.34 -0.4
1,420,982 - -1.2
1,420,982 - PGA1_c13760 0.34 -1.2
1,420,982 - PGA1_c13760 0.34 -0.1
1,420,982 - PGA1_c13760 0.34 +0.6
1,420,988 + PGA1_c13760 0.34 +0.2
1,421,024 + PGA1_c13760 0.36 +1.2
1,421,024 + PGA1_c13760 0.36 -0.4
1,421,024 + PGA1_c13760 0.36 -0.5
1,421,024 + PGA1_c13760 0.36 +0.1
1,421,024 + PGA1_c13760 0.36 -1.7
1,421,024 + PGA1_c13760 0.36 -1.5
1,421,024 + PGA1_c13760 0.36 +0.1
1,421,024 + PGA1_c13760 0.36 +0.5
1,421,024 + PGA1_c13760 0.36 +0.4
1,421,024 + PGA1_c13760 0.36 +0.4
1,421,024 + PGA1_c13760 0.36 +0.8
1,421,024 + PGA1_c13760 0.36 +0.3
1,421,032 - PGA1_c13760 0.37 -0.0
1,421,032 - PGA1_c13760 0.37 -0.4
1,421,032 - PGA1_c13760 0.37 +0.1
1,421,032 - PGA1_c13760 0.37 -1.1
1,421,032 - PGA1_c13760 0.37 -0.2
1,421,032 - PGA1_c13760 0.37 +0.3
1,421,032 - PGA1_c13760 0.37 -1.2
1,421,034 + PGA1_c13760 0.37 +0.3
1,421,042 - PGA1_c13760 0.37 +0.1
1,421,087 + PGA1_c13760 0.40 -0.1
1,421,095 - PGA1_c13760 0.41 +0.3
1,421,095 - PGA1_c13760 0.41 -0.5
1,421,136 + PGA1_c13760 0.43 -0.2
1,421,146 + PGA1_c13760 0.44 -1.2
1,421,146 + PGA1_c13760 0.44 -0.1
1,421,187 - PGA1_c13760 0.46 +0.3
1,421,205 + PGA1_c13760 0.47 +1.5
1,421,208 - PGA1_c13760 0.48 -0.1
1,421,221 - PGA1_c13760 0.48 +1.5
1,421,229 - PGA1_c13760 0.49 -0.8
1,421,273 - PGA1_c13760 0.52 -1.9
1,421,273 - PGA1_c13760 0.52 +0.8
1,421,292 + PGA1_c13760 0.53 -0.2
1,421,305 - PGA1_c13760 0.54 -0.1
1,421,317 + PGA1_c13760 0.54 +0.7
1,421,325 - PGA1_c13760 0.55 +0.6
1,421,367 - PGA1_c13760 0.58 +0.8
1,421,381 + PGA1_c13760 0.58 -0.0
1,421,381 + PGA1_c13760 0.58 -0.0
1,421,381 + PGA1_c13760 0.58 -0.0
1,421,381 + PGA1_c13760 0.58 -0.4
1,421,381 + PGA1_c13760 0.58 -0.1
1,421,381 + PGA1_c13760 0.58 -0.1
1,421,389 - PGA1_c13760 0.59 -0.1
1,421,389 - PGA1_c13760 0.59 +0.3
1,421,389 - PGA1_c13760 0.59 -1.7
1,421,389 - PGA1_c13760 0.59 +0.3
1,421,389 - PGA1_c13760 0.59 +0.6
1,421,389 - PGA1_c13760 0.59 +0.2
1,421,396 + PGA1_c13760 0.59 +0.7
1,421,396 + PGA1_c13760 0.59 +0.0
1,421,396 + PGA1_c13760 0.59 -0.7
1,421,396 + PGA1_c13760 0.59 -0.1
1,421,404 - PGA1_c13760 0.60 -0.8
1,421,404 - PGA1_c13760 0.60 +0.6
1,421,422 - PGA1_c13760 0.61 -1.1

Or see this region's nucleotide sequence