Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c01300 and PGA1_c01310 are separated by 127 nucleotides PGA1_c01310 and PGA1_c01320 are separated by 261 nucleotides
PGA1_c01300: PGA1_c01300 - DNA topoisomerase 4 subunit A, at 120,748 to 123,096
_c01300
PGA1_c01310: PGA1_c01310 - hypothetical protein, at 123,224 to 123,835
_c01310
PGA1_c01320: PGA1_c01320 - elongation factor Tu, at 124,097 to 125,272
_c01320
Position (kb)
123
124 Strain fitness (log2 ratio)
-2
-1
0
1 at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.118 kb on + strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.126 kb on - strand at 123.138 kb on + strand at 123.745 kb on + strand, within PGA1_c01310 at 123.761 kb on + strand, within PGA1_c01310 at 123.764 kb on - strand, within PGA1_c01310 at 123.766 kb on + strand, within PGA1_c01310 at 123.766 kb on + strand, within PGA1_c01310 at 123.769 kb on - strand, within PGA1_c01310 at 123.771 kb on + strand, within PGA1_c01310 at 123.774 kb on - strand at 123.779 kb on - strand at 123.877 kb on - strand at 123.930 kb on + strand at 123.930 kb on + strand at 123.970 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 123,118 + -0.5 123,118 + +0.5 123,118 + +0.3 123,118 + -0.4 123,118 + -0.7 123,118 + +0.2 123,118 + +0.2 123,118 + -0.3 123,118 + -1.0 123,118 + -0.6 123,118 + +0.7 123,118 + -1.5 123,126 - -0.1 123,126 - -0.0 123,126 - -0.1 123,126 - -0.0 123,126 - +0.7 123,126 - -0.1 123,126 - -0.5 123,126 - -0.1 123,126 - -0.8 123,126 - -1.9 123,126 - +0.4 123,138 + -0.3 123,745 + PGA1_c01310 0.85 -0.4 123,761 + PGA1_c01310 0.88 -1.8 123,764 - PGA1_c01310 0.88 -0.1 123,766 + PGA1_c01310 0.89 -0.1 123,766 + PGA1_c01310 0.89 -1.0 123,769 - PGA1_c01310 0.89 -0.7 123,771 + PGA1_c01310 0.89 +0.1 123,774 - -1.9 123,779 - -0.2 123,877 - +0.4 123,930 + -0.2 123,930 + -0.2 123,970 + +0.4
Or see this region's nucleotide sequence