Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PGA1_c10720 and PGA1_c10730 are separated by 126 nucleotides PGA1_c10730 and PGA1_c10740 are separated by 48 nucleotides PGA1_c10740 and PGA1_c10750 are separated by 108 nucleotides
PGA1_c10720: PGA1_c10720 - putative sec-independent protein translocase protein TatC, at 1,108,408 to 1,109,376
_c10720
PGA1_c10730: PGA1_c10730 - ribose-5-phosphate isomerase B, at 1,109,503 to 1,109,958
_c10730
PGA1_c10740: PGA1_c10740 - Predicted ATPase (AAA+ superfamily), at 1,110,007 to 1,110,849
_c10740
PGA1_c10750: PGA1_c10750 - putative peptidoglycan binding peptidase, at 1,110,958 to 1,112,184
_c10750
Position (kb)
1109
1110 Strain fitness (log2 ratio)
-1
0
1 at 1109.331 kb on - strand at 1109.422 kb on + strand at 1109.463 kb on + strand at 1109.530 kb on + strand at 1109.560 kb on - strand, within PGA1_c10730 at 1109.562 kb on + strand, within PGA1_c10730 at 1109.570 kb on - strand, within PGA1_c10730 at 1109.597 kb on + strand, within PGA1_c10730 at 1109.605 kb on - strand, within PGA1_c10730 at 1109.921 kb on + strand at 1109.961 kb on + strand at 1109.968 kb on + strand at 1110.014 kb on + strand at 1110.019 kb on + strand at 1110.019 kb on + strand at 1110.026 kb on + strand at 1110.027 kb on - strand at 1110.066 kb on + strand at 1110.125 kb on + strand, within PGA1_c10740 at 1110.171 kb on + strand, within PGA1_c10740 at 1110.179 kb on - strand, within PGA1_c10740 at 1110.190 kb on + strand, within PGA1_c10740 at 1110.230 kb on + strand, within PGA1_c10740 at 1110.230 kb on + strand, within PGA1_c10740 at 1110.411 kb on - strand, within PGA1_c10740 at 1110.417 kb on - strand, within PGA1_c10740 at 1110.430 kb on + strand, within PGA1_c10740 at 1110.433 kb on - strand, within PGA1_c10740 at 1110.451 kb on + strand, within PGA1_c10740 at 1110.478 kb on + strand, within PGA1_c10740 at 1110.504 kb on + strand, within PGA1_c10740 at 1110.519 kb on + strand, within PGA1_c10740 at 1110.522 kb on - strand, within PGA1_c10740 at 1110.586 kb on + strand, within PGA1_c10740 at 1110.766 kb on + strand at 1110.812 kb on - strand at 1110.831 kb on - strand at 1110.841 kb on - strand at 1110.885 kb on - strand at 1110.940 kb on + strand at 1110.948 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,109,331 - -0.5 1,109,422 + +0.1 1,109,463 + +0.5 1,109,530 + +0.2 1,109,560 - PGA1_c10730 0.12 +0.3 1,109,562 + PGA1_c10730 0.13 +0.3 1,109,570 - PGA1_c10730 0.15 -1.5 1,109,597 + PGA1_c10730 0.21 +1.0 1,109,605 - PGA1_c10730 0.22 +0.3 1,109,921 + +0.1 1,109,961 + -0.5 1,109,968 + +0.5 1,110,014 + +0.5 1,110,019 + -0.6 1,110,019 + +0.4 1,110,026 + +0.5 1,110,027 - +0.5 1,110,066 + -0.5 1,110,125 + PGA1_c10740 0.14 +0.1 1,110,171 + PGA1_c10740 0.19 +0.5 1,110,179 - PGA1_c10740 0.20 +0.1 1,110,190 + PGA1_c10740 0.22 +0.6 1,110,230 + PGA1_c10740 0.26 -0.4 1,110,230 + PGA1_c10740 0.26 -0.8 1,110,411 - PGA1_c10740 0.48 -0.1 1,110,417 - PGA1_c10740 0.49 +0.5 1,110,430 + PGA1_c10740 0.50 -0.6 1,110,433 - PGA1_c10740 0.51 +0.1 1,110,451 + PGA1_c10740 0.53 +0.2 1,110,478 + PGA1_c10740 0.56 +0.4 1,110,504 + PGA1_c10740 0.59 +0.6 1,110,519 + PGA1_c10740 0.61 +0.8 1,110,522 - PGA1_c10740 0.61 -0.2 1,110,586 + PGA1_c10740 0.69 +0.4 1,110,766 + -0.5 1,110,812 - +0.3 1,110,831 - +0.0 1,110,841 - +0.2 1,110,885 - +0.3 1,110,940 + -0.5 1,110,948 - -0.4
Or see this region's nucleotide sequence