Strain Fitness in Caulobacter crescentus NA1000 around CCNA_02906

Experiment: PYE_noCalcium 4C survival rep3 58 days

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	PYE_noCalcium 4C survival rep3 58 days
3,060,625	+		CCNA_02904	0.42	-1.8
3,060,673	+		CCNA_02904	0.49	+0.1
3,060,731	+		CCNA_02904	0.56	+0.3
3,060,731	+		CCNA_02904	0.56	-1.0
3,060,739	-		CCNA_02904	0.57	-2.0
3,060,739	-		CCNA_02904	0.57	-0.2
3,060,778	+		CCNA_02904	0.63	-1.3
3,060,788	+		CCNA_02904	0.64	+1.8
3,060,827	+		CCNA_02904	0.69	+0.8
3,060,827	+		CCNA_02904	0.69	-0.3
3,060,827	+		CCNA_02904	0.69	+0.3
3,060,827	+		CCNA_02904	0.69	+0.7
3,060,832	+		CCNA_02904	0.70	+0.6
3,060,844	+		CCNA_02904	0.71	+0.4
3,060,869	+		CCNA_02904	0.75	+1.5
3,060,894	+		CCNA_02904	0.78	-0.1
3,060,902	-		CCNA_02904	0.79	+0.3
3,060,954	+		CCNA_02904	0.86	-0.1
3,060,960	+		CCNA_02904	0.87	+1.1
3,061,002	+				+2.2
3,061,075	-				-1.1
3,061,075	-				-0.6
3,061,081	+				-1.2
3,061,087	-				+0.5
3,061,098	+				+0.7
3,061,101	+				+0.3
3,061,101	+				-0.8
3,061,109	-				+1.0
3,061,115	+				-1.6
3,061,115	+				-0.1
3,061,116	+				-2.0
3,061,116	+				+1.1
3,061,119	-				-0.6
3,061,126	+				-2.5
3,061,152	+				-0.9
3,061,188	-		CCNA_02905	0.10	-1.0
3,061,192	-		CCNA_02905	0.11	-2.3
3,061,198	+		CCNA_02905	0.13	-0.8
3,061,211	+		CCNA_02905	0.16	+2.2
3,061,222	+		CCNA_02905	0.19	+1.5
3,061,222	+		CCNA_02905	0.19	+1.2
3,061,230	-		CCNA_02905	0.21	-1.1
3,061,230	-		CCNA_02905	0.21	+0.2
3,061,330	+		CCNA_02905	0.48	-0.3
3,061,347	+		CCNA_02905	0.52	-0.8
3,061,348	-		CCNA_02905	0.52	+1.2
3,061,367	+		CCNA_02905	0.57	+0.5
3,061,372	+		CCNA_02905	0.59	-0.6
3,061,386	+		CCNA_02905	0.62	-1.7
3,061,395	-		CCNA_02905	0.65	+0.7
3,061,456	+		CCNA_02905	0.81	-0.0
3,061,461	+		CCNA_02905	0.82	+0.2
3,061,461	+		CCNA_02905	0.82	-2.6
3,061,462	+		CCNA_02905	0.83	-3.6
3,061,464	-		CCNA_02905	0.83	+2.2
3,061,469	-		CCNA_02905	0.84	-3.2
3,061,469	-		CCNA_02905	0.84	+0.4
3,061,469	-		CCNA_02905	0.84	-1.7
3,061,524	-				-0.1
3,061,529	-				+2.2
3,061,535	+				+0.5
3,061,556	+				-0.8
3,061,567	+				+0.3
3,061,568	-				-1.6
3,061,575	-				-0.8
3,061,577	-				-0.7
3,061,604	+				-0.4
3,061,606	+				-1.6
3,061,606	+				-1.0
3,061,646	-				-3.2
3,061,671	-				+0.2
3,061,680	+				+1.6
3,061,686	+				-0.8
3,061,768	+		CCNA_02906	0.13	-0.9
3,061,792	+		CCNA_02906	0.16	-0.4
3,061,807	+		CCNA_02906	0.17	-2.4
3,061,825	+		CCNA_02906	0.19	+1.0
3,061,830	+		CCNA_02906	0.19	+4.2
3,061,830	+		CCNA_02906	0.19	+0.4
3,061,830	+		CCNA_02906	0.19	-0.4
3,061,839	-		CCNA_02906	0.20	-1.5
3,061,845	+		CCNA_02906	0.20	-0.5
3,061,876	+		CCNA_02906	0.23	-0.6
3,061,895	+		CCNA_02906	0.25	-2.7
3,061,895	+		CCNA_02906	0.25	-1.4
3,061,895	+		CCNA_02906	0.25	+0.3
3,061,895	+				-1.6
3,061,896	+		CCNA_02906	0.25	+1.4
3,061,903	+		CCNA_02906	0.26	-0.7
3,061,903	-		CCNA_02906	0.26	+0.6
3,061,903	-		CCNA_02906	0.26	+2.2
3,061,908	+		CCNA_02906	0.26	-4.1
3,061,921	-		CCNA_02906	0.27	-2.1
3,061,927	+		CCNA_02906	0.28	-1.8
3,061,961	+		CCNA_02906	0.31	-0.8
3,061,964	+		CCNA_02906	0.31	-3.3
3,061,966	+		CCNA_02906	0.32	-0.3
3,061,966	+		CCNA_02906	0.32	+3.0
3,061,966	+		CCNA_02906	0.32	-0.1
3,061,966	+		CCNA_02906	0.32	-0.8
3,061,969	-		CCNA_02906	0.32	-0.1
3,061,974	-		CCNA_02906	0.32	-0.1
3,061,974	-		CCNA_02906	0.32	-0.4
3,061,974	-		CCNA_02906	0.32	-0.6
3,061,974	-		CCNA_02906	0.32	-1.1
3,061,974	-		CCNA_02906	0.32	-2.2
3,061,974	-		CCNA_02906	0.32	-0.6
3,061,988	+		CCNA_02906	0.34	-1.2
3,061,988	+		CCNA_02906	0.34	-1.5
3,061,988	+		CCNA_02906	0.34	+0.3
3,061,996	-		CCNA_02906	0.34	-0.6
3,061,996	-		CCNA_02906	0.34	+0.2
3,061,998	+		CCNA_02906	0.34	-1.9
3,062,006	-		CCNA_02906	0.35	-2.2
3,062,031	+		CCNA_02906	0.37	-1.6
3,062,031	+		CCNA_02906	0.37	+0.5
3,062,031	+		CCNA_02906	0.37	-0.2
3,062,031	+		CCNA_02906	0.37	+0.2
3,062,039	-		CCNA_02906	0.38	-0.4
3,062,050	+		CCNA_02906	0.39	-0.6
3,062,159	+		CCNA_02906	0.49	-0.3
3,062,159	+		CCNA_02906	0.49	+0.1
3,062,164	+		CCNA_02906	0.50	-0.5
3,062,169	+		CCNA_02906	0.50	-0.6
3,062,169	+		CCNA_02906	0.50	-1.1
3,062,172	-		CCNA_02906	0.50	-0.1
3,062,180	+		CCNA_02906	0.51	-0.5
3,062,188	-		CCNA_02906	0.52	-0.6
3,062,188	-		CCNA_02906	0.52	-1.8
3,062,204	+		CCNA_02906	0.53	+1.4
3,062,232	+		CCNA_02906	0.56	-2.6
3,062,236	-		CCNA_02906	0.56	-0.8
3,062,254	+		CCNA_02906	0.58	-2.7
3,062,282	+		CCNA_02906	0.60	-0.6
3,062,282	+		CCNA_02906	0.60	-0.2
3,062,290	-		CCNA_02906	0.61	-2.5
3,062,290	-		CCNA_02906	0.61	-2.4
3,062,334	-		CCNA_02906	0.65	+0.2
3,062,334	-		CCNA_02906	0.65	-0.6
3,062,356	-		CCNA_02906	0.67	+0.1
3,062,370	+		CCNA_02906	0.68	-3.1
3,062,370	+		CCNA_02906	0.68	-1.2
3,062,378	-		CCNA_02906	0.69	-0.2
3,062,389	+		CCNA_02906	0.70	-1.0
3,062,418	+		CCNA_02906	0.73	-0.9
3,062,429	-		CCNA_02906	0.74	+2.2
3,062,439	+		CCNA_02906	0.75	-0.4
3,062,439	+		CCNA_02906	0.75	+1.1
3,062,501	+		CCNA_02906	0.80	-0.7
3,062,536	+		CCNA_02906	0.84	+0.2
3,062,536	+		CCNA_02906	0.84	-0.9
3,062,549	-		CCNA_02906	0.85	+0.2
3,062,551	+		CCNA_02906	0.85	-1.4
3,062,552	+		CCNA_02906	0.85	-1.2
3,062,554	-		CCNA_02906	0.85	+2.2
3,062,560	-		CCNA_02906	0.86	-1.5
3,062,601	+		CCNA_02906	0.89	-0.4
3,062,601	+		CCNA_02906	0.89	-1.4
3,062,601	+		CCNA_02906	0.89	+0.5
3,062,601	+		CCNA_02906	0.89	-1.3
3,062,609	-				-2.7
3,062,609	-				-0.4
3,062,609	-				-0.4
3,062,609	-				-1.6
3,062,609	-				-0.8
3,062,609	-				-2.4
3,062,667	+				+0.4
3,062,667	+				-0.8
3,062,684	-				-2.4
3,062,709	+				+0.8
3,062,709	+				+0.2
3,062,717	-				+1.1
3,062,717	-				-1.0
3,062,717	-				+0.5
3,062,717	-				+2.2
3,062,721	+				+0.4
3,062,721	+				+1.1
3,062,721	+				+1.2
3,062,729	-				-0.3
3,062,752	-				+1.1
3,062,752	-				-0.1
3,062,789	-				+0.1