Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00350

Experiment: PYE_noCalcium 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00349 and CCNA_00350 overlap by 4 nucleotidesCCNA_00350 and CCNA_00351 are separated by 125 nucleotides CCNA_00349: CCNA_00349 - integrase/recombinase, XerC-CodV family, at 364,395 to 365,309 _00349 CCNA_00350: CCNA_00350 - hypothetical protein, at 365,306 to 365,986 _00350 CCNA_00351: CCNA_00351 - primosomal protein N', at 366,112 to 368,271 _00351 Position (kb) 365 366Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 364.312 kb on - strandat 364.339 kb on + strandat 364.339 kb on + strandat 364.345 kb on - strandat 364.399 kb on + strandat 364.399 kb on + strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.407 kb on - strandat 364.468 kb on + strandat 364.481 kb on - strandat 364.493 kb on + strand, within CCNA_00349at 364.494 kb on + strand, within CCNA_00349at 364.504 kb on + strand, within CCNA_00349at 364.535 kb on - strand, within CCNA_00349at 364.557 kb on - strand, within CCNA_00349at 364.572 kb on - strand, within CCNA_00349at 364.581 kb on - strand, within CCNA_00349at 364.622 kb on - strand, within CCNA_00349at 364.630 kb on + strand, within CCNA_00349at 364.638 kb on - strand, within CCNA_00349at 364.654 kb on + strand, within CCNA_00349at 364.672 kb on - strand, within CCNA_00349at 364.687 kb on + strand, within CCNA_00349at 364.707 kb on + strand, within CCNA_00349at 364.729 kb on + strand, within CCNA_00349at 364.747 kb on + strand, within CCNA_00349at 364.836 kb on - strand, within CCNA_00349at 364.838 kb on + strand, within CCNA_00349at 364.843 kb on + strand, within CCNA_00349at 364.846 kb on - strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.857 kb on + strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.865 kb on - strand, within CCNA_00349at 364.905 kb on + strand, within CCNA_00349at 364.913 kb on - strand, within CCNA_00349at 364.977 kb on - strand, within CCNA_00349at 365.003 kb on - strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.017 kb on + strand, within CCNA_00349at 365.063 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.065 kb on + strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.073 kb on - strand, within CCNA_00349at 365.092 kb on - strand, within CCNA_00349at 365.098 kb on - strand, within CCNA_00349at 365.113 kb on - strand, within CCNA_00349at 365.118 kb on - strand, within CCNA_00349at 365.153 kb on - strand, within CCNA_00349at 365.165 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.166 kb on + strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.174 kb on - strand, within CCNA_00349at 365.189 kb on + strand, within CCNA_00349at 365.283 kb on + strandat 365.287 kb on + strandat 365.295 kb on - strandat 365.311 kb on + strandat 365.316 kb on + strandat 365.319 kb on - strandat 365.321 kb on + strandat 365.321 kb on + strandat 365.329 kb on - strandat 365.506 kb on + strand, within CCNA_00350at 365.735 kb on - strand, within CCNA_00350at 365.830 kb on + strand, within CCNA_00350at 366.008 kb on - strandat 366.009 kb on - strandat 366.080 kb on - strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.103 kb on + strandat 366.112 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep3 58 days
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364,312 - -1.4
364,339 + -0.1
364,339 + +1.6
364,345 - -0.7
364,399 + +0.3
364,399 + -1.5
364,407 - +1.4
364,407 - -1.4
364,407 - -0.5
364,407 - -0.5
364,407 - -1.7
364,468 + -1.4
364,481 - +1.6
364,493 + CCNA_00349 0.11 -0.4
364,494 + CCNA_00349 0.11 +0.6
364,504 + CCNA_00349 0.12 +0.2
364,535 - CCNA_00349 0.15 -2.5
364,557 - CCNA_00349 0.18 -0.3
364,572 - CCNA_00349 0.19 +0.6
364,581 - CCNA_00349 0.20 -0.7
364,622 - CCNA_00349 0.25 -2.8
364,630 + CCNA_00349 0.26 +0.2
364,638 - CCNA_00349 0.27 -1.2
364,654 + CCNA_00349 0.28 -2.5
364,672 - CCNA_00349 0.30 -0.8
364,687 + CCNA_00349 0.32 -2.0
364,707 + CCNA_00349 0.34 -0.5
364,729 + CCNA_00349 0.37 -2.0
364,747 + CCNA_00349 0.38 -2.1
364,836 - CCNA_00349 0.48 +0.8
364,838 + CCNA_00349 0.48 -1.0
364,843 + CCNA_00349 0.49 +0.6
364,846 - CCNA_00349 0.49 +0.5
364,857 + CCNA_00349 0.50 -2.3
364,857 + CCNA_00349 0.50 +0.2
364,865 - CCNA_00349 0.51 -0.4
364,865 - CCNA_00349 0.51 -1.6
364,865 - CCNA_00349 0.51 -0.9
364,865 - CCNA_00349 0.51 -2.2
364,905 + CCNA_00349 0.56 -0.7
364,913 - CCNA_00349 0.57 -0.0
364,977 - CCNA_00349 0.64 +3.2
365,003 - CCNA_00349 0.66 +2.0
365,017 + CCNA_00349 0.68 -0.8
365,017 + CCNA_00349 0.68 -1.5
365,063 + CCNA_00349 0.73 -2.0
365,065 + CCNA_00349 0.73 -2.3
365,065 + CCNA_00349 0.73 +1.2
365,073 - CCNA_00349 0.74 -1.0
365,073 - CCNA_00349 0.74 -2.8
365,092 - CCNA_00349 0.76 -1.2
365,098 - CCNA_00349 0.77 +0.7
365,113 - CCNA_00349 0.78 -0.4
365,118 - CCNA_00349 0.79 -0.3
365,153 - CCNA_00349 0.83 -0.4
365,165 + CCNA_00349 0.84 -0.2
365,166 + CCNA_00349 0.84 +0.6
365,166 + CCNA_00349 0.84 -3.5
365,174 - CCNA_00349 0.85 -0.0
365,174 - CCNA_00349 0.85 -0.4
365,189 + CCNA_00349 0.87 -1.5
365,283 + -1.1
365,287 + +0.3
365,295 - -1.7
365,311 + -2.6
365,316 + -0.1
365,319 - +0.3
365,321 + -0.4
365,321 + -1.8
365,329 - -3.1
365,506 + CCNA_00350 0.29 -2.2
365,735 - CCNA_00350 0.63 -2.3
365,830 + CCNA_00350 0.77 -2.1
366,008 - -0.0
366,009 - +0.3
366,080 - -0.3
366,103 + +1.2
366,103 + -0.2
366,103 + +0.9
366,112 + -0.2

Or see this region's nucleotide sequence