Strain Fitness in Caulobacter crescentus NA1000 around CCNA_00075

Experiment: PYE_noCalcium 4C survival rep3 58 days

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCCNA_00074 and CCNA_00075 are separated by 24 nucleotidesCCNA_00075 and CCNA_00076 are separated by 66 nucleotidesCCNA_00076 and CCNA_00077 overlap by 4 nucleotides CCNA_00074: CCNA_00074 - multifunctional fatty acid oxidation complex subunit alpha FadJ, at 76,477 to 78,678 _00074 CCNA_00075: CCNA_00075 - 3-ketoacyl-CoA thiolase, at 78,703 to 79,908 _00075 CCNA_00076: CCNA_00076 - hypothetical protein, at 79,975 to 80,358 _00076 CCNA_00077: CCNA_00077 - acyl-CoA dehydrogenase, long-chain specific, at 80,355 to 81,530 _00077 Position (kb) 78 79 80Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3 4at 77.712 kb on - strand, within CCNA_00074at 77.748 kb on - strand, within CCNA_00074at 77.753 kb on - strand, within CCNA_00074at 77.765 kb on - strand, within CCNA_00074at 77.767 kb on + strand, within CCNA_00074at 77.768 kb on + strand, within CCNA_00074at 77.778 kb on - strand, within CCNA_00074at 77.792 kb on + strand, within CCNA_00074at 77.792 kb on + strand, within CCNA_00074at 77.792 kb on + strand, within CCNA_00074at 77.800 kb on - strand, within CCNA_00074at 77.800 kb on - strand, within CCNA_00074at 77.800 kb on - strand, within CCNA_00074at 77.800 kb on - strand, within CCNA_00074at 77.862 kb on + strand, within CCNA_00074at 77.896 kb on + strand, within CCNA_00074at 77.899 kb on + strand, within CCNA_00074at 77.902 kb on - strand, within CCNA_00074at 77.912 kb on - strand, within CCNA_00074at 77.918 kb on + strand, within CCNA_00074at 77.926 kb on - strand, within CCNA_00074at 77.937 kb on + strand, within CCNA_00074at 77.937 kb on + strand, within CCNA_00074at 77.945 kb on - strand, within CCNA_00074at 77.951 kb on + strand, within CCNA_00074at 77.985 kb on - strand, within CCNA_00074at 77.987 kb on - strand, within CCNA_00074at 77.990 kb on + strand, within CCNA_00074at 78.000 kb on + strand, within CCNA_00074at 78.038 kb on + strand, within CCNA_00074at 78.046 kb on - strand, within CCNA_00074at 78.046 kb on - strand, within CCNA_00074at 78.050 kb on + strand, within CCNA_00074at 78.063 kb on - strand, within CCNA_00074at 78.063 kb on - strand, within CCNA_00074at 78.065 kb on - strand, within CCNA_00074at 78.095 kb on - strand, within CCNA_00074at 78.143 kb on + strand, within CCNA_00074at 78.151 kb on - strand, within CCNA_00074at 78.209 kb on + strand, within CCNA_00074at 78.251 kb on - strand, within CCNA_00074at 78.252 kb on - strand, within CCNA_00074at 78.385 kb on - strand, within CCNA_00074at 78.480 kb on - strandat 78.485 kb on - strandat 78.495 kb on + strandat 78.524 kb on + strandat 78.527 kb on + strandat 78.535 kb on - strandat 78.545 kb on + strandat 78.553 kb on - strandat 78.553 kb on - strandat 78.601 kb on - strandat 78.631 kb on + strandat 78.644 kb on - strandat 78.644 kb on - strandat 78.701 kb on + strandat 78.701 kb on + strandat 78.709 kb on - strandat 78.709 kb on - strandat 78.709 kb on - strandat 78.757 kb on + strandat 78.757 kb on + strandat 78.765 kb on - strandat 78.775 kb on - strandat 78.783 kb on + strandat 78.832 kb on - strand, within CCNA_00075at 78.925 kb on - strand, within CCNA_00075at 78.930 kb on - strand, within CCNA_00075at 78.947 kb on - strand, within CCNA_00075at 78.955 kb on + strand, within CCNA_00075at 78.956 kb on - strand, within CCNA_00075at 78.964 kb on - strand, within CCNA_00075at 78.968 kb on + strand, within CCNA_00075at 78.985 kb on - strand, within CCNA_00075at 78.997 kb on + strand, within CCNA_00075at 78.997 kb on + strand, within CCNA_00075at 79.005 kb on - strand, within CCNA_00075at 79.007 kb on + strand, within CCNA_00075at 79.010 kb on - strand, within CCNA_00075at 79.017 kb on + strand, within CCNA_00075at 79.029 kb on + strand, within CCNA_00075at 79.037 kb on - strand, within CCNA_00075at 79.039 kb on + strand, within CCNA_00075at 79.047 kb on - strand, within CCNA_00075at 79.052 kb on + strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.060 kb on - strand, within CCNA_00075at 79.086 kb on - strand, within CCNA_00075at 79.106 kb on - strand, within CCNA_00075at 79.116 kb on - strand, within CCNA_00075at 79.139 kb on + strand, within CCNA_00075at 79.145 kb on - strand, within CCNA_00075at 79.176 kb on - strand, within CCNA_00075at 79.182 kb on + strand, within CCNA_00075at 79.227 kb on - strand, within CCNA_00075at 79.264 kb on - strand, within CCNA_00075at 79.289 kb on + strand, within CCNA_00075at 79.297 kb on - strand, within CCNA_00075at 79.300 kb on + strand, within CCNA_00075at 79.309 kb on + strand, within CCNA_00075at 79.309 kb on + strand, within CCNA_00075at 79.314 kb on + strand, within CCNA_00075at 79.357 kb on + strand, within CCNA_00075at 79.369 kb on + strand, within CCNA_00075at 79.429 kb on + strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.437 kb on - strand, within CCNA_00075at 79.445 kb on - strand, within CCNA_00075at 79.460 kb on + strand, within CCNA_00075at 79.470 kb on - strand, within CCNA_00075at 79.491 kb on - strand, within CCNA_00075at 79.595 kb on + strand, within CCNA_00075at 79.612 kb on + strand, within CCNA_00075at 79.621 kb on + strand, within CCNA_00075at 79.643 kb on + strand, within CCNA_00075at 79.674 kb on - strand, within CCNA_00075at 79.689 kb on + strand, within CCNA_00075at 79.714 kb on + strand, within CCNA_00075at 79.731 kb on + strand, within CCNA_00075at 79.741 kb on + strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.749 kb on - strand, within CCNA_00075at 79.761 kb on - strand, within CCNA_00075at 79.778 kb on - strand, within CCNA_00075at 79.779 kb on - strand, within CCNA_00075at 79.795 kb on + strandat 79.832 kb on + strandat 79.840 kb on - strandat 79.853 kb on + strandat 79.861 kb on - strandat 79.884 kb on + strandat 79.918 kb on - strandat 79.930 kb on + strandat 79.930 kb on + strandat 80.006 kb on - strandat 80.050 kb on + strand, within CCNA_00076at 80.100 kb on + strand, within CCNA_00076at 80.143 kb on - strand, within CCNA_00076at 80.148 kb on + strand, within CCNA_00076at 80.159 kb on - strand, within CCNA_00076at 80.213 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.254 kb on + strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.262 kb on - strand, within CCNA_00076at 80.270 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.275 kb on + strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.283 kb on - strand, within CCNA_00076at 80.294 kb on + strand, within CCNA_00076at 80.324 kb on - strandat 80.360 kb on - strandat 80.393 kb on - strandat 80.414 kb on + strandat 80.508 kb on - strand, within CCNA_00077at 80.508 kb on - strand, within CCNA_00077at 80.521 kb on + strand, within CCNA_00077at 80.529 kb on - strand, within CCNA_00077at 80.556 kb on + strandat 80.581 kb on + strand, within CCNA_00077at 80.589 kb on - strand, within CCNA_00077at 80.600 kb on - strand, within CCNA_00077at 80.608 kb on - strand, within CCNA_00077at 80.620 kb on + strand, within CCNA_00077at 80.673 kb on + strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.681 kb on - strand, within CCNA_00077at 80.706 kb on + strand, within CCNA_00077at 80.727 kb on + strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.742 kb on - strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.754 kb on + strand, within CCNA_00077at 80.804 kb on - strand, within CCNA_00077at 80.812 kb on + strand, within CCNA_00077at 80.820 kb on - strandat 80.856 kb on - strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.858 kb on + strand, within CCNA_00077at 80.866 kb on - strand, within CCNA_00077at 80.868 kb on + strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077at 80.876 kb on - strand, within CCNA_00077

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Per-strain Table

Position Strand Gene LocusTag Fraction PYE_noCalcium 4C survival rep3 58 days
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77,712 - CCNA_00074 0.56 +0.4
77,748 - CCNA_00074 0.58 -0.7
77,753 - CCNA_00074 0.58 +0.2
77,765 - CCNA_00074 0.58 +0.3
77,767 + CCNA_00074 0.59 +0.7
77,768 + CCNA_00074 0.59 +0.1
77,778 - CCNA_00074 0.59 -0.9
77,792 + CCNA_00074 0.60 +0.8
77,792 + CCNA_00074 0.60 +1.3
77,792 + CCNA_00074 0.60 -2.5
77,800 - CCNA_00074 0.60 +1.1
77,800 - CCNA_00074 0.60 -0.9
77,800 - CCNA_00074 0.60 -2.4
77,800 - CCNA_00074 0.60 -0.1
77,862 + CCNA_00074 0.63 -0.3
77,896 + CCNA_00074 0.64 -0.3
77,899 + CCNA_00074 0.65 +2.7
77,902 - CCNA_00074 0.65 +1.5
77,912 - CCNA_00074 0.65 +0.7
77,918 + CCNA_00074 0.65 +0.4
77,926 - CCNA_00074 0.66 -0.3
77,937 + CCNA_00074 0.66 +2.2
77,937 + CCNA_00074 0.66 +0.2
77,945 - CCNA_00074 0.67 +0.4
77,951 + CCNA_00074 0.67 +1.1
77,985 - CCNA_00074 0.68 +0.5
77,987 - CCNA_00074 0.69 -3.7
77,990 + CCNA_00074 0.69 +0.7
78,000 + CCNA_00074 0.69 -0.7
78,038 + CCNA_00074 0.71 +0.7
78,046 - CCNA_00074 0.71 -2.9
78,046 - CCNA_00074 0.71 +0.6
78,050 + CCNA_00074 0.71 +1.0
78,063 - CCNA_00074 0.72 +0.0
78,063 - CCNA_00074 0.72 -0.1
78,065 - CCNA_00074 0.72 -1.1
78,095 - CCNA_00074 0.73 +0.3
78,143 + CCNA_00074 0.76 -1.2
78,151 - CCNA_00074 0.76 -0.3
78,209 + CCNA_00074 0.79 -0.9
78,251 - CCNA_00074 0.81 -0.3
78,252 - CCNA_00074 0.81 +1.2
78,385 - CCNA_00074 0.87 -0.3
78,480 - +0.4
78,485 - +0.7
78,495 + -0.5
78,524 + -0.6
78,527 + -0.9
78,535 - +0.9
78,545 + -2.6
78,553 - +0.8
78,553 - +0.1
78,601 - +0.6
78,631 + -1.8
78,644 - -0.3
78,644 - +1.9
78,701 + -0.0
78,701 + +3.3
78,709 - -0.3
78,709 - +0.6
78,709 - +1.3
78,757 + +1.7
78,757 + -1.3
78,765 - -0.4
78,775 - +0.8
78,783 + -1.8
78,832 - CCNA_00075 0.11 +4.7
78,925 - CCNA_00075 0.18 +0.2
78,930 - CCNA_00075 0.19 -0.2
78,947 - CCNA_00075 0.20 +1.2
78,955 + CCNA_00075 0.21 +0.6
78,956 - CCNA_00075 0.21 +2.7
78,964 - CCNA_00075 0.22 +0.0
78,968 + CCNA_00075 0.22 +1.2
78,985 - CCNA_00075 0.23 -0.3
78,997 + CCNA_00075 0.24 -2.1
78,997 + CCNA_00075 0.24 -0.0
79,005 - CCNA_00075 0.25 +1.0
79,007 + CCNA_00075 0.25 -0.2
79,010 - CCNA_00075 0.25 +2.7
79,017 + CCNA_00075 0.26 -0.8
79,029 + CCNA_00075 0.27 +0.1
79,037 - CCNA_00075 0.28 +1.3
79,039 + CCNA_00075 0.28 +1.8
79,047 - CCNA_00075 0.29 +0.3
79,052 + CCNA_00075 0.29 -1.0
79,060 - CCNA_00075 0.30 +1.1
79,060 - CCNA_00075 0.30 +0.8
79,060 - CCNA_00075 0.30 +2.0
79,060 - CCNA_00075 0.30 +0.8
79,086 - CCNA_00075 0.32 +0.6
79,106 - CCNA_00075 0.33 -0.6
79,116 - CCNA_00075 0.34 +0.2
79,139 + CCNA_00075 0.36 +0.2
79,145 - CCNA_00075 0.37 -0.7
79,176 - CCNA_00075 0.39 -0.7
79,182 + CCNA_00075 0.40 -1.6
79,227 - CCNA_00075 0.43 -1.0
79,264 - CCNA_00075 0.47 +0.8
79,289 + CCNA_00075 0.49 +0.3
79,297 - CCNA_00075 0.49 +0.4
79,300 + CCNA_00075 0.50 +1.3
79,309 + CCNA_00075 0.50 +1.6
79,309 + CCNA_00075 0.50 -0.1
79,314 + CCNA_00075 0.51 +1.4
79,357 + CCNA_00075 0.54 -1.5
79,369 + CCNA_00075 0.55 -2.2
79,429 + CCNA_00075 0.60 -0.5
79,437 - CCNA_00075 0.61 +0.7
79,437 - CCNA_00075 0.61 +1.9
79,437 - CCNA_00075 0.61 -0.2
79,437 - CCNA_00075 0.61 +0.9
79,437 - CCNA_00075 0.61 -0.4
79,445 - CCNA_00075 0.62 +1.8
79,460 + CCNA_00075 0.63 +0.5
79,470 - CCNA_00075 0.64 +0.7
79,491 - CCNA_00075 0.65 -0.7
79,595 + CCNA_00075 0.74 +0.7
79,612 + CCNA_00075 0.75 -1.0
79,621 + CCNA_00075 0.76 +0.7
79,643 + CCNA_00075 0.78 -2.9
79,674 - CCNA_00075 0.81 +2.7
79,689 + CCNA_00075 0.82 +0.2
79,714 + CCNA_00075 0.84 -0.9
79,731 + CCNA_00075 0.85 -4.1
79,741 + CCNA_00075 0.86 +0.3
79,749 - CCNA_00075 0.87 -0.3
79,749 - CCNA_00075 0.87 +0.3
79,761 - CCNA_00075 0.88 -0.6
79,778 - CCNA_00075 0.89 +0.8
79,779 - CCNA_00075 0.89 +0.4
79,795 + -0.1
79,832 + -0.4
79,840 - +0.7
79,853 + -1.7
79,861 - +0.5
79,884 + -1.3
79,918 - +0.4
79,930 + -1.5
79,930 + -2.5
80,006 - +0.8
80,050 + CCNA_00076 0.20 +0.2
80,100 + CCNA_00076 0.33 +0.3
80,143 - CCNA_00076 0.44 +1.4
80,148 + CCNA_00076 0.45 +0.2
80,159 - CCNA_00076 0.48 +0.2
80,213 + CCNA_00076 0.62 +0.0
80,254 + CCNA_00076 0.73 +0.6
80,254 + CCNA_00076 0.73 -2.0
80,262 - CCNA_00076 0.75 +1.3
80,262 - CCNA_00076 0.75 +0.5
80,262 - CCNA_00076 0.75 -0.5
80,270 + CCNA_00076 0.77 -1.4
80,275 + CCNA_00076 0.78 +0.3
80,275 + CCNA_00076 0.78 -1.0
80,275 + CCNA_00076 0.78 +0.2
80,275 + CCNA_00076 0.78 +0.4
80,283 - CCNA_00076 0.80 -0.2
80,283 - CCNA_00076 0.80 +0.7
80,283 - CCNA_00076 0.80 +1.0
80,294 + CCNA_00076 0.83 +1.1
80,324 - -0.0
80,360 - +0.5
80,393 - +0.0
80,414 + -0.0
80,508 - CCNA_00077 0.13 +0.4
80,508 - CCNA_00077 0.13 +1.0
80,521 + CCNA_00077 0.14 -1.7
80,529 - CCNA_00077 0.15 +0.6
80,556 + -1.8
80,581 + CCNA_00077 0.19 -1.5
80,589 - CCNA_00077 0.20 +1.7
80,600 - CCNA_00077 0.21 -1.6
80,608 - CCNA_00077 0.22 -0.6
80,620 + CCNA_00077 0.23 +0.9
80,673 + CCNA_00077 0.27 +0.9
80,681 - CCNA_00077 0.28 +0.6
80,681 - CCNA_00077 0.28 +2.7
80,681 - CCNA_00077 0.28 +0.1
80,706 + CCNA_00077 0.30 -0.3
80,727 + CCNA_00077 0.32 -0.5
80,742 - CCNA_00077 0.33 -0.8
80,742 - CCNA_00077 0.33 -1.0
80,742 - CCNA_00077 0.33 -0.4
80,754 + CCNA_00077 0.34 -1.9
80,754 + CCNA_00077 0.34 -0.1
80,754 + CCNA_00077 0.34 -0.4
80,804 - CCNA_00077 0.38 -0.4
80,812 + CCNA_00077 0.39 -0.6
80,820 - -0.3
80,856 - CCNA_00077 0.43 -0.9
80,858 + CCNA_00077 0.43 -2.4
80,858 + CCNA_00077 0.43 -1.6
80,866 - CCNA_00077 0.43 -2.7
80,868 + CCNA_00077 0.44 -0.9
80,876 - CCNA_00077 0.44 -1.8
80,876 - CCNA_00077 0.44 -3.0
80,876 - CCNA_00077 0.44 +1.0

Or see this region's nucleotide sequence