Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2786

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2785 and DvMF_2786 are separated by 324 nucleotidesDvMF_2786 and DvMF_2787 are separated by 191 nucleotides DvMF_2785: DvMF_2785 - methyl-accepting chemotaxis sensory transducer with Pas/Pac sensor (RefSeq), at 3,524,844 to 3,526,868 _2785 DvMF_2786: DvMF_2786 - polar amino acid ABC transporter, inner membrane subunit (RefSeq), at 3,527,193 to 3,528,983 _2786 DvMF_2787: DvMF_2787 - extracellular solute-binding protein family 3 (RefSeq), at 3,529,175 to 3,530,002 _2787 Position (kb) 3527 3528 3529Strain fitness (log2 ratio) -1 0 1at 3526.513 kb on + strand, within DvMF_2785at 3526.728 kb on + strandat 3526.864 kb on + strandat 3526.974 kb on - strandat 3527.492 kb on - strand, within DvMF_2786at 3527.615 kb on + strand, within DvMF_2786at 3527.854 kb on + strand, within DvMF_2786at 3527.940 kb on + strand, within DvMF_2786at 3528.203 kb on + strand, within DvMF_2786at 3528.243 kb on + strand, within DvMF_2786at 3528.345 kb on - strand, within DvMF_2786at 3528.424 kb on + strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.460 kb on - strand, within DvMF_2786at 3528.726 kb on - strand, within DvMF_2786at 3528.841 kb on + strandat 3528.989 kb on + strandat 3529.055 kb on - strandat 3529.078 kb on + strandat 3529.080 kb on + strandat 3529.735 kb on + strand, within DvMF_2787at 3529.942 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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3,526,513 + DvMF_2785 0.82 -1.7
3,526,728 + -0.1
3,526,864 + -0.6
3,526,974 - -0.5
3,527,492 - DvMF_2786 0.17 -0.4
3,527,615 + DvMF_2786 0.24 -0.0
3,527,854 + DvMF_2786 0.37 -0.3
3,527,940 + DvMF_2786 0.42 -0.4
3,528,203 + DvMF_2786 0.56 -0.2
3,528,243 + DvMF_2786 0.59 -0.5
3,528,345 - DvMF_2786 0.64 -1.0
3,528,424 + DvMF_2786 0.69 +0.4
3,528,460 - DvMF_2786 0.71 -0.9
3,528,460 - DvMF_2786 0.71 +1.3
3,528,460 - DvMF_2786 0.71 -0.8
3,528,460 - DvMF_2786 0.71 -0.2
3,528,726 - DvMF_2786 0.86 +0.5
3,528,841 + -0.5
3,528,989 + -0.4
3,529,055 - -0.3
3,529,078 + -0.2
3,529,080 + +0.2
3,529,735 + DvMF_2787 0.68 -1.2
3,529,942 - -0.5

Or see this region's nucleotide sequence