Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2765

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2764 and valS are separated by 217 nucleotidesvalS and DvMF_2766 are separated by 383 nucleotidesDvMF_2766 and DvMF_2767 are separated by 93 nucleotides DvMF_2764: DvMF_2764 - hypothetical protein (RefSeq), at 3,495,758 to 3,497,035 _2764 DvMF_2765: valS - valyl-tRNA synthetase (RefSeq), at 3,497,253 to 3,499,904 valS DvMF_2766: DvMF_2766 - hypothetical protein (RefSeq), at 3,500,288 to 3,500,746 _2766 DvMF_2767: DvMF_2767 - uroporphyrin-III C-methyltransferase (RefSeq), at 3,500,840 to 3,502,351 _2767 Position (kb) 3497 3498 3499 3500Strain fitness (log2 ratio) -3 -2 -1 0 1at 3496.558 kb on - strand, within DvMF_2764at 3496.656 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.735 kb on + strand, within DvMF_2764at 3496.743 kb on - strand, within DvMF_2764at 3496.854 kb on + strand, within DvMF_2764at 3496.862 kb on - strand, within DvMF_2764at 3496.964 kb on + strandat 3500.333 kb on + strandat 3500.426 kb on - strand, within DvMF_2766at 3500.564 kb on + strand, within DvMF_2766at 3500.683 kb on + strand, within DvMF_2766at 3500.686 kb on - strand, within DvMF_2766

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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3,496,558 - DvMF_2764 0.63 -0.8
3,496,656 + DvMF_2764 0.70 -2.0
3,496,735 + DvMF_2764 0.76 -0.9
3,496,735 + DvMF_2764 0.76 -2.5
3,496,735 + DvMF_2764 0.76 -0.9
3,496,743 - DvMF_2764 0.77 -3.2
3,496,854 + DvMF_2764 0.86 -2.3
3,496,862 - DvMF_2764 0.86 -1.3
3,496,964 + -3.0
3,500,333 + -1.1
3,500,426 - DvMF_2766 0.30 -0.2
3,500,564 + DvMF_2766 0.60 -1.4
3,500,683 + DvMF_2766 0.86 -0.3
3,500,686 - DvMF_2766 0.87 +0.2

Or see this region's nucleotide sequence