Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2676

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2675 and DvMF_2676 are separated by 385 nucleotidesDvMF_2676 and DvMF_2677 are separated by 321 nucleotides DvMF_2675: DvMF_2675 - HflC protein (RefSeq), at 3,378,099 to 3,378,953 _2675 DvMF_2676: DvMF_2676 - putative phage repressor (RefSeq), at 3,379,339 to 3,380,034 _2676 DvMF_2677: DvMF_2677 - response regulator receiver sensor hybrid histidine kinase (RefSeq), at 3,380,356 to 3,382,266 _2677 Position (kb) 3379 3380 3381Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3378.974 kb on + strandat 3379.117 kb on + strandat 3379.414 kb on + strand, within DvMF_2676at 3379.553 kb on + strand, within DvMF_2676at 3379.558 kb on + strand, within DvMF_2676at 3380.086 kb on - strandat 3380.341 kb on - strandat 3380.358 kb on - strandat 3380.447 kb on + strandat 3380.743 kb on + strand, within DvMF_2677at 3380.818 kb on + strand, within DvMF_2677at 3380.922 kb on + strand, within DvMF_2677at 3380.972 kb on - strand, within DvMF_2677at 3380.972 kb on - strand, within DvMF_2677

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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3,378,974 + -0.2
3,379,117 + -0.2
3,379,414 + DvMF_2676 0.11 -0.9
3,379,553 + DvMF_2676 0.31 -2.2
3,379,558 + DvMF_2676 0.31 -1.0
3,380,086 - -1.2
3,380,341 - -0.7
3,380,358 - +0.0
3,380,447 + -3.8
3,380,743 + DvMF_2677 0.20 -0.4
3,380,818 + DvMF_2677 0.24 -0.1
3,380,922 + DvMF_2677 0.30 +0.0
3,380,972 - DvMF_2677 0.32 -0.4
3,380,972 - DvMF_2677 0.32 -0.6

Or see this region's nucleotide sequence