Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2528

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2525 and DvMF_2526 are separated by 12 nucleotidesDvMF_2526 and DvMF_2527 overlap by 25 nucleotidesDvMF_2527 and DvMF_2528 are separated by 166 nucleotidesDvMF_2528 and DvMF_2529 are separated by 331 nucleotides DvMF_2525: DvMF_2525 - flagellar hook-associated protein 3 (RefSeq), at 3,184,345 to 3,185,868 _2525 DvMF_2526: DvMF_2526 - carbon storage regulator, CsrA (RefSeq), at 3,185,881 to 3,186,120 _2526 DvMF_2527: DvMF_2527 - flagellar assembly protein FliW (RefSeq), at 3,186,096 to 3,186,647 _2527 DvMF_2528: DvMF_2528 - transcriptional regulator, NifA subfamily, Fis Family (RefSeq), at 3,186,814 to 3,188,553 _2528 DvMF_2529: DvMF_2529 - MscS Mechanosensitive ion channel (RefSeq), at 3,188,885 to 3,191,479 _2529 Position (kb) 3186 3187 3188 3189Strain fitness (log2 ratio) -3 -2 -1 0 1at 3185.967 kb on + strand, within DvMF_2526at 3186.155 kb on + strand, within DvMF_2527at 3186.327 kb on - strand, within DvMF_2527at 3186.818 kb on - strandat 3186.848 kb on + strandat 3186.922 kb on + strandat 3186.922 kb on + strandat 3186.924 kb on + strandat 3186.930 kb on - strandat 3186.984 kb on + strandat 3186.984 kb on + strandat 3186.986 kb on + strandat 3186.992 kb on - strand, within DvMF_2528at 3186.994 kb on - strand, within DvMF_2528at 3186.994 kb on - strand, within DvMF_2528at 3187.085 kb on + strand, within DvMF_2528at 3187.171 kb on - strand, within DvMF_2528at 3187.370 kb on - strand, within DvMF_2528at 3187.617 kb on - strand, within DvMF_2528at 3187.890 kb on + strand, within DvMF_2528at 3187.901 kb on - strand, within DvMF_2528at 3188.281 kb on - strand, within DvMF_2528at 3188.462 kb on + strandat 3188.526 kb on + strandat 3188.742 kb on + strandat 3188.742 kb on + strandat 3188.748 kb on - strandat 3188.750 kb on - strandat 3188.969 kb on + strandat 3189.128 kb on - strandat 3189.242 kb on - strand, within DvMF_2529

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
remove
3,185,967 + DvMF_2526 0.36 -0.3
3,186,155 + DvMF_2527 0.11 +0.3
3,186,327 - DvMF_2527 0.42 -0.3
3,186,818 - -1.0
3,186,848 + -0.9
3,186,922 + -0.0
3,186,922 + -0.9
3,186,924 + -1.4
3,186,930 - -0.2
3,186,984 + -0.5
3,186,984 + +0.9
3,186,986 + -0.8
3,186,992 - DvMF_2528 0.10 -1.6
3,186,994 - DvMF_2528 0.10 +0.2
3,186,994 - DvMF_2528 0.10 -0.9
3,187,085 + DvMF_2528 0.16 -1.2
3,187,171 - DvMF_2528 0.21 -0.2
3,187,370 - DvMF_2528 0.32 -1.1
3,187,617 - DvMF_2528 0.46 -0.4
3,187,890 + DvMF_2528 0.62 -1.3
3,187,901 - DvMF_2528 0.62 -0.4
3,188,281 - DvMF_2528 0.84 -1.5
3,188,462 + -3.0
3,188,526 + -0.5
3,188,742 + +0.5
3,188,742 + +0.0
3,188,748 - -1.0
3,188,750 - -0.9
3,188,969 + -1.5
3,189,128 - -1.0
3,189,242 - DvMF_2529 0.14 -0.3

Or see this region's nucleotide sequence