Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_2129 and DvMF_2130 are separated by 842 nucleotides DvMF_2130 and DvMF_R0055 are separated by 67 nucleotides DvMF_R0055 and DvMF_2131 are separated by 562 nucleotides
DvMF_2129: DvMF_2129 - L-lactate transport (RefSeq), at 2,649,696 to 2,651,351
_2129
DvMF_2130: DvMF_2130 - Lysine exporter protein (LYSE/YGGA) (RefSeq), at 2,652,194 to 2,652,811
_2130
DvMF_R0055: DvMF_R0055 - tRNA-Ala (RefSeq), at 2,652,879 to 2,652,954
_R0055
DvMF_2131: DvMF_2131 - prolipoprotein diacylglyceryl transferase (RefSeq), at 2,653,517 to 2,654,314
_2131
Position (kb)
2652
2653 Strain fitness (log2 ratio)
-2
-1
0
1 at 2651.407 kb on - strand at 2651.446 kb on + strand at 2651.454 kb on - strand at 2651.612 kb on - strand at 2651.612 kb on - strand at 2651.689 kb on + strand at 2651.922 kb on - strand at 2651.959 kb on + strand at 2652.142 kb on - strand at 2652.257 kb on - strand, within DvMF_2130 at 2652.303 kb on + strand, within DvMF_2130 at 2652.315 kb on + strand, within DvMF_2130 at 2652.338 kb on - strand, within DvMF_2130 at 2652.374 kb on - strand, within DvMF_2130 at 2652.381 kb on + strand, within DvMF_2130 at 2652.599 kb on - strand, within DvMF_2130 at 2652.614 kb on - strand, within DvMF_2130 at 2652.700 kb on + strand, within DvMF_2130 at 2652.865 kb on + strand at 2653.088 kb on + strand at 2653.378 kb on + strand at 2653.450 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml remove 2,651,407 - -2.0 2,651,446 + -1.4 2,651,454 - -0.1 2,651,612 - -2.0 2,651,612 - -0.5 2,651,689 + -0.1 2,651,922 - -0.5 2,651,959 + -0.3 2,652,142 - -0.6 2,652,257 - DvMF_2130 0.10 -0.6 2,652,303 + DvMF_2130 0.18 +0.0 2,652,315 + DvMF_2130 0.20 -0.4 2,652,338 - DvMF_2130 0.23 -0.4 2,652,374 - DvMF_2130 0.29 +0.5 2,652,381 + DvMF_2130 0.30 -0.1 2,652,599 - DvMF_2130 0.66 +1.2 2,652,614 - DvMF_2130 0.68 +0.9 2,652,700 + DvMF_2130 0.82 -0.9 2,652,865 + -1.6 2,653,088 + -0.4 2,653,378 + +0.2 2,653,450 - -0.9
Or see this region's nucleotide sequence