Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2086

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2085 and DvMF_2086 are separated by 244 nucleotidesDvMF_2086 and asnC are separated by 252 nucleotides DvMF_2085: DvMF_2085 - putative lipoprotein (RefSeq), at 2,596,594 to 2,597,433 _2085 DvMF_2086: DvMF_2086 - UspA domain protein (RefSeq), at 2,597,678 to 2,598,139 _2086 DvMF_2087: asnC - asparaginyl-tRNA synthetase (RefSeq), at 2,598,392 to 2,599,807 asnC Position (kb) 2597 2598 2599Strain fitness (log2 ratio) -2 -1 0 1at 2596.819 kb on + strand, within DvMF_2085at 2596.891 kb on + strand, within DvMF_2085at 2597.050 kb on + strand, within DvMF_2085at 2597.138 kb on + strand, within DvMF_2085at 2597.143 kb on + strand, within DvMF_2085at 2597.832 kb on + strand, within DvMF_2086at 2597.854 kb on - strand, within DvMF_2086at 2597.903 kb on - strand, within DvMF_2086at 2598.018 kb on + strand, within DvMF_2086at 2598.092 kb on + strand, within DvMF_2086at 2598.197 kb on + strandat 2598.238 kb on - strandat 2598.250 kb on - strandat 2598.433 kb on - strandat 2598.513 kb on - strandat 2598.559 kb on + strand, within asnCat 2598.719 kb on + strand, within asnCat 2598.991 kb on - strand, within asnCat 2598.998 kb on - strand, within asnCat 2599.118 kb on - strand, within asnCat 2599.134 kb on - strand, within asnC

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
remove
2,596,819 + DvMF_2085 0.27 -1.5
2,596,891 + DvMF_2085 0.35 -0.6
2,597,050 + DvMF_2085 0.54 -0.3
2,597,138 + DvMF_2085 0.65 -0.3
2,597,143 + DvMF_2085 0.65 -0.2
2,597,832 + DvMF_2086 0.33 -1.5
2,597,854 - DvMF_2086 0.38 -0.7
2,597,903 - DvMF_2086 0.49 -0.7
2,598,018 + DvMF_2086 0.74 -1.8
2,598,092 + DvMF_2086 0.90 -0.3
2,598,197 + -0.1
2,598,238 - -0.9
2,598,250 - -0.8
2,598,433 - -0.9
2,598,513 - -0.4
2,598,559 + asnC DvMF_2087 0.12 -0.8
2,598,719 + asnC DvMF_2087 0.23 -1.2
2,598,991 - asnC DvMF_2087 0.42 -0.9
2,598,998 - asnC DvMF_2087 0.43 -0.9
2,599,118 - asnC DvMF_2087 0.51 -0.2
2,599,134 - asnC DvMF_2087 0.52 -0.3

Or see this region's nucleotide sequence