Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2042

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_2041 and DvMF_2042 overlap by 4 nucleotidesDvMF_2042 and DvMF_2043 are separated by 104 nucleotidesDvMF_2043 and DvMF_2044 are separated by 345 nucleotides DvMF_2041: DvMF_2041 - protein of unknown function DUF116 (RefSeq), at 2,531,921 to 2,532,985 _2041 DvMF_2042: DvMF_2042 - NusB/RsmB/TIM44 (RefSeq), at 2,532,982 to 2,534,574 _2042 DvMF_2043: DvMF_2043 - hypothetical protein (RefSeq), at 2,534,679 to 2,535,083 _2043 DvMF_2044: DvMF_2044 - PfkB domain protein (RefSeq), at 2,535,429 to 2,536,454 _2044 Position (kb) 2532 2533 2534 2535Strain fitness (log2 ratio) -3 -2 -1 0 1at 2532.068 kb on + strand, within DvMF_2041at 2532.156 kb on + strand, within DvMF_2041at 2532.184 kb on + strand, within DvMF_2041at 2532.347 kb on - strand, within DvMF_2041at 2532.494 kb on - strand, within DvMF_2041at 2532.657 kb on + strand, within DvMF_2041at 2532.786 kb on + strand, within DvMF_2041at 2532.997 kb on + strandat 2533.005 kb on - strandat 2533.027 kb on + strandat 2533.059 kb on + strandat 2533.059 kb on + strandat 2533.086 kb on - strandat 2533.094 kb on - strandat 2533.096 kb on + strandat 2533.113 kb on + strandat 2533.214 kb on + strand, within DvMF_2042at 2533.223 kb on + strand, within DvMF_2042at 2533.224 kb on - strand, within DvMF_2042at 2533.437 kb on + strand, within DvMF_2042at 2533.437 kb on + strand, within DvMF_2042at 2533.445 kb on - strand, within DvMF_2042at 2533.546 kb on + strand, within DvMF_2042at 2533.613 kb on + strand, within DvMF_2042at 2533.684 kb on + strand, within DvMF_2042at 2533.765 kb on + strand, within DvMF_2042at 2533.828 kb on + strand, within DvMF_2042at 2533.843 kb on + strand, within DvMF_2042at 2533.860 kb on + strand, within DvMF_2042at 2533.879 kb on + strand, within DvMF_2042at 2533.951 kb on + strand, within DvMF_2042at 2534.023 kb on - strand, within DvMF_2042at 2534.048 kb on + strand, within DvMF_2042at 2534.103 kb on + strand, within DvMF_2042at 2534.147 kb on - strand, within DvMF_2042at 2534.158 kb on + strand, within DvMF_2042at 2534.191 kb on + strand, within DvMF_2042at 2534.253 kb on - strand, within DvMF_2042at 2534.264 kb on + strand, within DvMF_2042at 2534.264 kb on + strand, within DvMF_2042at 2534.272 kb on - strand, within DvMF_2042at 2534.272 kb on - strand, within DvMF_2042at 2534.272 kb on - strand, within DvMF_2042at 2534.272 kb on - strand, within DvMF_2042at 2534.315 kb on - strand, within DvMF_2042at 2534.368 kb on + strand, within DvMF_2042at 2534.382 kb on + strand, within DvMF_2042at 2534.390 kb on - strand, within DvMF_2042at 2534.390 kb on - strand, within DvMF_2042at 2534.401 kb on + strand, within DvMF_2042at 2534.403 kb on - strand, within DvMF_2042at 2534.452 kb on + strandat 2534.460 kb on - strandat 2534.460 kb on - strandat 2534.460 kb on - strandat 2534.469 kb on - strandat 2534.562 kb on + strandat 2534.569 kb on + strandat 2534.582 kb on + strandat 2534.677 kb on + strandat 2534.753 kb on - strand, within DvMF_2043at 2534.781 kb on + strand, within DvMF_2043at 2534.879 kb on - strand, within DvMF_2043at 2534.879 kb on - strand, within DvMF_2043at 2534.899 kb on + strand, within DvMF_2043at 2534.939 kb on - strand, within DvMF_2043at 2534.969 kb on + strand, within DvMF_2043at 2534.969 kb on + strand, within DvMF_2043at 2534.974 kb on + strand, within DvMF_2043at 2534.988 kb on - strand, within DvMF_2043at 2535.054 kb on - strandat 2535.054 kb on - strandat 2535.068 kb on + strandat 2535.076 kb on - strandat 2535.076 kb on - strandat 2535.076 kb on - strandat 2535.207 kb on - strandat 2535.253 kb on + strandat 2535.261 kb on - strandat 2535.396 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
remove
2,532,068 + DvMF_2041 0.14 -2.2
2,532,156 + DvMF_2041 0.22 -3.1
2,532,184 + DvMF_2041 0.25 -1.3
2,532,347 - DvMF_2041 0.40 -1.5
2,532,494 - DvMF_2041 0.54 -2.7
2,532,657 + DvMF_2041 0.69 -1.6
2,532,786 + DvMF_2041 0.81 -0.6
2,532,997 + -1.0
2,533,005 - -1.6
2,533,027 + +1.2
2,533,059 + -0.9
2,533,059 + -1.5
2,533,086 - -0.6
2,533,094 - -0.7
2,533,096 + +0.0
2,533,113 + -1.7
2,533,214 + DvMF_2042 0.15 -1.0
2,533,223 + DvMF_2042 0.15 -0.4
2,533,224 - DvMF_2042 0.15 -0.3
2,533,437 + DvMF_2042 0.29 -0.4
2,533,437 + DvMF_2042 0.29 -0.6
2,533,445 - DvMF_2042 0.29 -0.8
2,533,546 + DvMF_2042 0.35 -0.7
2,533,613 + DvMF_2042 0.40 -2.2
2,533,684 + DvMF_2042 0.44 -0.5
2,533,765 + DvMF_2042 0.49 -0.1
2,533,828 + DvMF_2042 0.53 -0.5
2,533,843 + DvMF_2042 0.54 -0.7
2,533,860 + DvMF_2042 0.55 -0.3
2,533,879 + DvMF_2042 0.56 -0.1
2,533,951 + DvMF_2042 0.61 -0.7
2,534,023 - DvMF_2042 0.65 -0.0
2,534,048 + DvMF_2042 0.67 -0.8
2,534,103 + DvMF_2042 0.70 -0.5
2,534,147 - DvMF_2042 0.73 -0.3
2,534,158 + DvMF_2042 0.74 -0.8
2,534,191 + DvMF_2042 0.76 -0.5
2,534,253 - DvMF_2042 0.80 -2.2
2,534,264 + DvMF_2042 0.80 -0.5
2,534,264 + DvMF_2042 0.80 +0.4
2,534,272 - DvMF_2042 0.81 +0.1
2,534,272 - DvMF_2042 0.81 -0.9
2,534,272 - DvMF_2042 0.81 -0.8
2,534,272 - DvMF_2042 0.81 +0.5
2,534,315 - DvMF_2042 0.84 -0.7
2,534,368 + DvMF_2042 0.87 +0.1
2,534,382 + DvMF_2042 0.88 -1.0
2,534,390 - DvMF_2042 0.88 -0.3
2,534,390 - DvMF_2042 0.88 -0.3
2,534,401 + DvMF_2042 0.89 -1.1
2,534,403 - DvMF_2042 0.89 -0.7
2,534,452 + -0.8
2,534,460 - -0.9
2,534,460 - -0.4
2,534,460 - -0.1
2,534,469 - -0.4
2,534,562 + -0.8
2,534,569 + +0.0
2,534,582 + -1.1
2,534,677 + -1.2
2,534,753 - DvMF_2043 0.18 -0.3
2,534,781 + DvMF_2043 0.25 -1.7
2,534,879 - DvMF_2043 0.49 -0.4
2,534,879 - DvMF_2043 0.49 -0.5
2,534,899 + DvMF_2043 0.54 -1.0
2,534,939 - DvMF_2043 0.64 -0.6
2,534,969 + DvMF_2043 0.72 -0.1
2,534,969 + DvMF_2043 0.72 +0.1
2,534,974 + DvMF_2043 0.73 -1.1
2,534,988 - DvMF_2043 0.76 -0.6
2,535,054 - -0.6
2,535,054 - -0.4
2,535,068 + -0.4
2,535,076 - -0.5
2,535,076 - -0.4
2,535,076 - -0.3
2,535,207 - -1.7
2,535,253 + -0.3
2,535,261 - -0.2
2,535,396 - -0.3

Or see this region's nucleotide sequence