Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1871

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1870 and DvMF_1871 are separated by 230 nucleotidesDvMF_1871 and DvMF_R0050 are separated by 249 nucleotidesDvMF_R0050 and DvMF_1872 are separated by 75 nucleotides DvMF_1870: DvMF_1870 - protein of unknown function DUF362 (RefSeq), at 2,296,434 to 2,297,339 _1870 DvMF_1871: DvMF_1871 - Rhodanese domain protein (RefSeq), at 2,297,570 to 2,298,598 _1871 DvMF_R0050: DvMF_R0050 - tRNA-Pro (RefSeq), at 2,298,848 to 2,298,924 _R0050 DvMF_1872: DvMF_1872 - Acetamidase/Formamidase (RefSeq), at 2,299,000 to 2,300,289 _1872 Position (kb) 2297 2298 2299Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 2296.719 kb on - strand, within DvMF_1870at 2296.795 kb on + strand, within DvMF_1870at 2297.048 kb on + strand, within DvMF_1870at 2297.056 kb on - strand, within DvMF_1870at 2297.371 kb on + strandat 2297.385 kb on - strandat 2297.470 kb on - strandat 2297.934 kb on + strand, within DvMF_1871at 2298.040 kb on - strand, within DvMF_1871at 2298.612 kb on - strandat 2298.716 kb on - strandat 2298.743 kb on + strandat 2299.016 kb on + strandat 2299.103 kb on + strandat 2299.211 kb on + strand, within DvMF_1872at 2299.234 kb on - strand, within DvMF_1872at 2299.484 kb on - strand, within DvMF_1872

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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2,296,719 - DvMF_1870 0.31 +0.4
2,296,795 + DvMF_1870 0.40 +0.9
2,297,048 + DvMF_1870 0.68 -0.4
2,297,056 - DvMF_1870 0.69 -0.2
2,297,371 + -1.0
2,297,385 - +0.9
2,297,470 - -0.6
2,297,934 + DvMF_1871 0.35 -1.1
2,298,040 - DvMF_1871 0.46 -5.1
2,298,612 - -0.8
2,298,716 - +0.2
2,298,743 + -1.8
2,299,016 + -1.0
2,299,103 + -1.5
2,299,211 + DvMF_1872 0.16 +0.8
2,299,234 - DvMF_1872 0.18 -0.4
2,299,484 - DvMF_1872 0.38 -1.3

Or see this region's nucleotide sequence