Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1620

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1619 and DvMF_1620 are separated by 35 nucleotidesDvMF_1620 and DvMF_1621 are separated by 143 nucleotides DvMF_1619: DvMF_1619 - flagellar hook-associated protein FlgK (RefSeq), at 1,994,374 to 1,996,446 _1619 DvMF_1620: DvMF_1620 - flagellar hook-associated protein 3 (RefSeq), at 1,996,482 to 1,997,975 _1620 DvMF_1621: DvMF_1621 - flagellar hook-associated protein 2 domain protein (RefSeq), at 1,998,119 to 1,999,858 _1621 Position (kb) 1996 1997 1998Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1995.496 kb on - strand, within DvMF_1619at 1995.567 kb on - strand, within DvMF_1619at 1995.641 kb on - strand, within DvMF_1619at 1995.756 kb on + strand, within DvMF_1619at 1995.781 kb on + strand, within DvMF_1619at 1995.971 kb on + strand, within DvMF_1619at 1995.979 kb on - strand, within DvMF_1619at 1996.119 kb on + strand, within DvMF_1619at 1996.155 kb on + strand, within DvMF_1619at 1996.155 kb on + strand, within DvMF_1619at 1996.155 kb on + strand, within DvMF_1619at 1996.163 kb on - strand, within DvMF_1619at 1996.403 kb on - strandat 1996.618 kb on - strandat 1996.623 kb on - strandat 1996.623 kb on - strandat 1996.626 kb on + strandat 1996.724 kb on - strand, within DvMF_1620at 1996.815 kb on + strand, within DvMF_1620at 1996.880 kb on - strand, within DvMF_1620at 1996.923 kb on + strand, within DvMF_1620at 1996.958 kb on - strand, within DvMF_1620at 1996.970 kb on - strand, within DvMF_1620at 1997.132 kb on - strand, within DvMF_1620at 1997.137 kb on - strand, within DvMF_1620at 1997.140 kb on + strand, within DvMF_1620at 1997.287 kb on - strand, within DvMF_1620at 1997.584 kb on + strand, within DvMF_1620at 1997.644 kb on + strand, within DvMF_1620at 1997.662 kb on - strand, within DvMF_1620at 1997.752 kb on - strand, within DvMF_1620at 1997.849 kb on + strandat 1998.024 kb on + strandat 1998.163 kb on - strandat 1998.220 kb on + strandat 1998.304 kb on + strand, within DvMF_1621at 1998.312 kb on - strand, within DvMF_1621at 1998.312 kb on - strand, within DvMF_1621at 1998.423 kb on + strand, within DvMF_1621at 1998.509 kb on + strand, within DvMF_1621at 1998.528 kb on + strand, within DvMF_1621at 1998.549 kb on + strand, within DvMF_1621at 1998.556 kb on - strand, within DvMF_1621at 1998.861 kb on + strand, within DvMF_1621

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,995,496 - DvMF_1619 0.54 -0.2
1,995,567 - DvMF_1619 0.58 -0.9
1,995,641 - DvMF_1619 0.61 -0.1
1,995,756 + DvMF_1619 0.67 -1.1
1,995,781 + DvMF_1619 0.68 -0.6
1,995,971 + DvMF_1619 0.77 -0.3
1,995,979 - DvMF_1619 0.77 -1.7
1,996,119 + DvMF_1619 0.84 -0.6
1,996,155 + DvMF_1619 0.86 -0.9
1,996,155 + DvMF_1619 0.86 -0.4
1,996,155 + DvMF_1619 0.86 -1.3
1,996,163 - DvMF_1619 0.86 -0.4
1,996,403 - +0.1
1,996,618 - -0.3
1,996,623 - +0.3
1,996,623 - -1.3
1,996,626 + +0.6
1,996,724 - DvMF_1620 0.16 -0.7
1,996,815 + DvMF_1620 0.22 +0.1
1,996,880 - DvMF_1620 0.27 -0.6
1,996,923 + DvMF_1620 0.30 -0.7
1,996,958 - DvMF_1620 0.32 -0.9
1,996,970 - DvMF_1620 0.33 +0.2
1,997,132 - DvMF_1620 0.44 -0.5
1,997,137 - DvMF_1620 0.44 +0.7
1,997,140 + DvMF_1620 0.44 +0.6
1,997,287 - DvMF_1620 0.54 +0.9
1,997,584 + DvMF_1620 0.74 -0.3
1,997,644 + DvMF_1620 0.78 -0.7
1,997,662 - DvMF_1620 0.79 -4.6
1,997,752 - DvMF_1620 0.85 -0.5
1,997,849 + -1.0
1,998,024 + -0.5
1,998,163 - -1.2
1,998,220 + -0.3
1,998,304 + DvMF_1621 0.11 -0.3
1,998,312 - DvMF_1621 0.11 -0.7
1,998,312 - DvMF_1621 0.11 +0.0
1,998,423 + DvMF_1621 0.17 -0.9
1,998,509 + DvMF_1621 0.22 +0.1
1,998,528 + DvMF_1621 0.24 -0.5
1,998,549 + DvMF_1621 0.25 -1.1
1,998,556 - DvMF_1621 0.25 -0.2
1,998,861 + DvMF_1621 0.43 -0.0

Or see this region's nucleotide sequence