Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1619 and DvMF_1620 are separated by 35 nucleotides DvMF_1620 and DvMF_1621 are separated by 143 nucleotides
DvMF_1619: DvMF_1619 - flagellar hook-associated protein FlgK (RefSeq), at 1,994,374 to 1,996,446
_1619
DvMF_1620: DvMF_1620 - flagellar hook-associated protein 3 (RefSeq), at 1,996,482 to 1,997,975
_1620
DvMF_1621: DvMF_1621 - flagellar hook-associated protein 2 domain protein (RefSeq), at 1,998,119 to 1,999,858
_1621
Position (kb)
1996
1997
1998 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 1995.496 kb on - strand, within DvMF_1619 at 1995.567 kb on - strand, within DvMF_1619 at 1995.641 kb on - strand, within DvMF_1619 at 1995.756 kb on + strand, within DvMF_1619 at 1995.781 kb on + strand, within DvMF_1619 at 1995.971 kb on + strand, within DvMF_1619 at 1995.979 kb on - strand, within DvMF_1619 at 1996.119 kb on + strand, within DvMF_1619 at 1996.155 kb on + strand, within DvMF_1619 at 1996.155 kb on + strand, within DvMF_1619 at 1996.155 kb on + strand, within DvMF_1619 at 1996.163 kb on - strand, within DvMF_1619 at 1996.403 kb on - strand at 1996.618 kb on - strand at 1996.623 kb on - strand at 1996.623 kb on - strand at 1996.626 kb on + strand at 1996.724 kb on - strand, within DvMF_1620 at 1996.815 kb on + strand, within DvMF_1620 at 1996.880 kb on - strand, within DvMF_1620 at 1996.923 kb on + strand, within DvMF_1620 at 1996.958 kb on - strand, within DvMF_1620 at 1996.970 kb on - strand, within DvMF_1620 at 1997.132 kb on - strand, within DvMF_1620 at 1997.137 kb on - strand, within DvMF_1620 at 1997.140 kb on + strand, within DvMF_1620 at 1997.287 kb on - strand, within DvMF_1620 at 1997.584 kb on + strand, within DvMF_1620 at 1997.644 kb on + strand, within DvMF_1620 at 1997.662 kb on - strand, within DvMF_1620 at 1997.752 kb on - strand, within DvMF_1620 at 1997.849 kb on + strand at 1998.024 kb on + strand at 1998.163 kb on - strand at 1998.220 kb on + strand at 1998.304 kb on + strand, within DvMF_1621 at 1998.312 kb on - strand, within DvMF_1621 at 1998.312 kb on - strand, within DvMF_1621 at 1998.423 kb on + strand, within DvMF_1621 at 1998.509 kb on + strand, within DvMF_1621 at 1998.528 kb on + strand, within DvMF_1621 at 1998.549 kb on + strand, within DvMF_1621 at 1998.556 kb on - strand, within DvMF_1621 at 1998.861 kb on + strand, within DvMF_1621
Per-strain Table
Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml remove 1,995,496 - DvMF_1619 0.54 -0.2 1,995,567 - DvMF_1619 0.58 -0.9 1,995,641 - DvMF_1619 0.61 -0.1 1,995,756 + DvMF_1619 0.67 -1.1 1,995,781 + DvMF_1619 0.68 -0.6 1,995,971 + DvMF_1619 0.77 -0.3 1,995,979 - DvMF_1619 0.77 -1.7 1,996,119 + DvMF_1619 0.84 -0.6 1,996,155 + DvMF_1619 0.86 -0.9 1,996,155 + DvMF_1619 0.86 -0.4 1,996,155 + DvMF_1619 0.86 -1.3 1,996,163 - DvMF_1619 0.86 -0.4 1,996,403 - +0.1 1,996,618 - -0.3 1,996,623 - +0.3 1,996,623 - -1.3 1,996,626 + +0.6 1,996,724 - DvMF_1620 0.16 -0.7 1,996,815 + DvMF_1620 0.22 +0.1 1,996,880 - DvMF_1620 0.27 -0.6 1,996,923 + DvMF_1620 0.30 -0.7 1,996,958 - DvMF_1620 0.32 -0.9 1,996,970 - DvMF_1620 0.33 +0.2 1,997,132 - DvMF_1620 0.44 -0.5 1,997,137 - DvMF_1620 0.44 +0.7 1,997,140 + DvMF_1620 0.44 +0.6 1,997,287 - DvMF_1620 0.54 +0.9 1,997,584 + DvMF_1620 0.74 -0.3 1,997,644 + DvMF_1620 0.78 -0.7 1,997,662 - DvMF_1620 0.79 -4.6 1,997,752 - DvMF_1620 0.85 -0.5 1,997,849 + -1.0 1,998,024 + -0.5 1,998,163 - -1.2 1,998,220 + -0.3 1,998,304 + DvMF_1621 0.11 -0.3 1,998,312 - DvMF_1621 0.11 -0.7 1,998,312 - DvMF_1621 0.11 +0.0 1,998,423 + DvMF_1621 0.17 -0.9 1,998,509 + DvMF_1621 0.22 +0.1 1,998,528 + DvMF_1621 0.24 -0.5 1,998,549 + DvMF_1621 0.25 -1.1 1,998,556 - DvMF_1621 0.25 -0.2 1,998,861 + DvMF_1621 0.43 -0.0
Or see this region's nucleotide sequence