Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1617

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1615 and DvMF_1616 are separated by 371 nucleotidesDvMF_1616 and DvMF_1617 overlap by 26 nucleotidesDvMF_1617 and DvMF_1618 are separated by 33 nucleotides DvMF_1615: DvMF_1615 - hypothetical protein (RefSeq), at 1,990,770 to 1,991,183 _1615 DvMF_1616: DvMF_1616 - hypothetical protein (RefSeq), at 1,991,555 to 1,991,902 _1616 DvMF_1617: DvMF_1617 - flagellar hook capping protein (RefSeq), at 1,991,877 to 1,992,545 _1617 DvMF_1618: DvMF_1618 - protein of unknown function DUF1078 domain protein (RefSeq), at 1,992,579 to 1,994,156 _1618 Position (kb) 1991 1992 1993Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1991.034 kb on - strand, within DvMF_1615at 1991.365 kb on + strandat 1992.065 kb on - strand, within DvMF_1617at 1992.125 kb on - strand, within DvMF_1617at 1992.166 kb on - strand, within DvMF_1617at 1992.206 kb on + strand, within DvMF_1617at 1992.218 kb on + strand, within DvMF_1617at 1992.229 kb on + strand, within DvMF_1617at 1992.302 kb on - strand, within DvMF_1617at 1992.618 kb on + strandat 1992.620 kb on + strandat 1992.636 kb on - strandat 1992.668 kb on + strandat 1992.689 kb on + strandat 1992.712 kb on - strandat 1992.828 kb on - strand, within DvMF_1618at 1992.941 kb on + strand, within DvMF_1618at 1992.974 kb on - strand, within DvMF_1618at 1993.083 kb on - strand, within DvMF_1618at 1993.140 kb on + strand, within DvMF_1618

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,991,034 - DvMF_1615 0.64 -0.4
1,991,365 + -2.0
1,992,065 - DvMF_1617 0.28 -0.7
1,992,125 - DvMF_1617 0.37 -0.1
1,992,166 - DvMF_1617 0.43 -0.4
1,992,206 + DvMF_1617 0.49 -0.7
1,992,218 + DvMF_1617 0.51 -0.3
1,992,229 + DvMF_1617 0.53 +0.1
1,992,302 - DvMF_1617 0.64 +1.2
1,992,618 + +1.2
1,992,620 + -1.0
1,992,636 - -0.2
1,992,668 + -0.2
1,992,689 + -0.4
1,992,712 - -0.5
1,992,828 - DvMF_1618 0.16 -1.9
1,992,941 + DvMF_1618 0.23 -0.2
1,992,974 - DvMF_1618 0.25 -4.3
1,993,083 - DvMF_1618 0.32 -0.0
1,993,140 + DvMF_1618 0.36 -1.1

Or see this region's nucleotide sequence