Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1602

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1601 and DvMF_1602 are separated by 10 nucleotidesDvMF_1602 and DvMF_1603 overlap by 14 nucleotides DvMF_1601: DvMF_1601 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,971,390 to 1,972,889 _1601 DvMF_1602: DvMF_1602 - hypothetical protein (RefSeq), at 1,972,900 to 1,973,157 _1602 DvMF_1603: DvMF_1603 - putative monovalent cation/H+ antiporter subunit D (RefSeq), at 1,973,144 to 1,974,928 _1603 Position (kb) 1972 1973 1974Strain fitness (log2 ratio) -2 -1 0 1at 1971.959 kb on - strand, within DvMF_1601at 1972.038 kb on + strand, within DvMF_1601at 1972.046 kb on - strand, within DvMF_1601at 1972.065 kb on + strand, within DvMF_1601at 1972.230 kb on + strand, within DvMF_1601at 1972.254 kb on - strand, within DvMF_1601at 1972.316 kb on + strand, within DvMF_1601at 1972.323 kb on + strand, within DvMF_1601at 1972.392 kb on - strand, within DvMF_1601at 1972.418 kb on - strand, within DvMF_1601at 1972.525 kb on + strand, within DvMF_1601at 1972.549 kb on + strand, within DvMF_1601at 1972.640 kb on + strand, within DvMF_1601at 1972.761 kb on + strandat 1972.968 kb on - strand, within DvMF_1602at 1972.973 kb on - strand, within DvMF_1602at 1973.042 kb on + strand, within DvMF_1602at 1973.135 kb on - strandat 1973.140 kb on - strandat 1973.297 kb on - strandat 1973.308 kb on - strandat 1973.308 kb on - strandat 1973.323 kb on - strand, within DvMF_1603at 1973.521 kb on - strand, within DvMF_1603at 1973.554 kb on - strand, within DvMF_1603at 1973.659 kb on - strand, within DvMF_1603at 1973.913 kb on - strand, within DvMF_1603at 1974.154 kb on + strand, within DvMF_1603

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,971,959 - DvMF_1601 0.38 +0.6
1,972,038 + DvMF_1601 0.43 -1.2
1,972,046 - DvMF_1601 0.44 -0.4
1,972,065 + DvMF_1601 0.45 -0.2
1,972,230 + DvMF_1601 0.56 +0.7
1,972,254 - DvMF_1601 0.58 -0.0
1,972,316 + DvMF_1601 0.62 -0.8
1,972,323 + DvMF_1601 0.62 -0.4
1,972,392 - DvMF_1601 0.67 -1.2
1,972,418 - DvMF_1601 0.69 +0.1
1,972,525 + DvMF_1601 0.76 +0.7
1,972,549 + DvMF_1601 0.77 +0.1
1,972,640 + DvMF_1601 0.83 +1.2
1,972,761 + -0.5
1,972,968 - DvMF_1602 0.26 -1.5
1,972,973 - DvMF_1602 0.28 -2.7
1,973,042 + DvMF_1602 0.55 -1.2
1,973,135 - +0.5
1,973,140 - -1.6
1,973,297 - +0.1
1,973,308 - -0.4
1,973,308 - -2.6
1,973,323 - DvMF_1603 0.10 -0.5
1,973,521 - DvMF_1603 0.21 -0.6
1,973,554 - DvMF_1603 0.23 +0.0
1,973,659 - DvMF_1603 0.29 -0.4
1,973,913 - DvMF_1603 0.43 -0.5
1,974,154 + DvMF_1603 0.57 +0.8

Or see this region's nucleotide sequence