Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1560

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1559 and DvMF_1560 are separated by 237 nucleotidesDvMF_1560 and DvMF_1561 are separated by 26 nucleotidesDvMF_1561 and DvMF_1562 are separated by 432 nucleotides DvMF_1559: DvMF_1559 - sodium/sulphate symporter (RefSeq), at 1,923,649 to 1,925,157 _1559 DvMF_1560: DvMF_1560 - histone family protein DNA-binding protein (RefSeq), at 1,925,395 to 1,925,688 _1560 DvMF_1561: DvMF_1561 - histidine triad (HIT) protein (RefSeq), at 1,925,715 to 1,926,134 _1561 DvMF_1562: DvMF_1562 - Radical SAM domain protein (RefSeq), at 1,926,567 to 1,927,772 _1562 Position (kb) 1925 1926Strain fitness (log2 ratio) -2 -1 0 1at 1924.439 kb on - strand, within DvMF_1559at 1924.687 kb on + strand, within DvMF_1559at 1924.855 kb on + strand, within DvMF_1559at 1925.219 kb on - strandat 1925.891 kb on - strand, within DvMF_1561at 1925.973 kb on + strand, within DvMF_1561at 1926.001 kb on + strand, within DvMF_1561

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,924,439 - DvMF_1559 0.52 -0.5
1,924,687 + DvMF_1559 0.69 -1.5
1,924,855 + DvMF_1559 0.80 -0.9
1,925,219 - -0.8
1,925,891 - DvMF_1561 0.42 -1.2
1,925,973 + DvMF_1561 0.61 -2.3
1,926,001 + DvMF_1561 0.68 -1.9

Or see this region's nucleotide sequence