Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1170

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1169 and DvMF_1170 are separated by 410 nucleotidesDvMF_1170 and DvMF_1171 are separated by 30 nucleotidesDvMF_1171 and DvMF_1172 are separated by 124 nucleotides DvMF_1169: DvMF_1169 - hypothetical protein (RefSeq), at 1,443,829 to 1,446,888 _1169 DvMF_1170: DvMF_1170 - Alcohol dehydrogenase zinc-binding domain protein (RefSeq), at 1,447,299 to 1,448,294 _1170 DvMF_1171: DvMF_1171 - C_GCAxxG_C_C family protein (RefSeq), at 1,448,325 to 1,449,098 _1171 DvMF_1172: DvMF_1172 - Rhodanese domain protein (RefSeq), at 1,449,223 to 1,449,744 _1172 Position (kb) 1447 1448 1449Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1446.358 kb on - strand, within DvMF_1169at 1446.479 kb on - strand, within DvMF_1169at 1446.697 kb on + strandat 1446.726 kb on - strandat 1446.795 kb on - strandat 1447.093 kb on - strandat 1447.238 kb on + strandat 1447.246 kb on - strandat 1447.246 kb on - strandat 1447.519 kb on - strand, within DvMF_1170at 1447.741 kb on + strandat 1447.961 kb on - strand, within DvMF_1170at 1448.042 kb on + strand, within DvMF_1170at 1448.105 kb on + strand, within DvMF_1170at 1448.389 kb on - strandat 1448.919 kb on - strand, within DvMF_1171at 1448.971 kb on - strand, within DvMF_1171at 1449.000 kb on + strand, within DvMF_1171at 1449.244 kb on + strandat 1449.244 kb on + strandat 1449.252 kb on - strandat 1449.252 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,446,358 - DvMF_1169 0.83 -3.9
1,446,479 - DvMF_1169 0.87 -1.1
1,446,697 + -0.5
1,446,726 - -3.2
1,446,795 - -0.7
1,447,093 - -0.8
1,447,238 + -4.7
1,447,246 - -0.5
1,447,246 - -0.7
1,447,519 - DvMF_1170 0.22 +0.9
1,447,741 + -0.5
1,447,961 - DvMF_1170 0.66 -0.5
1,448,042 + DvMF_1170 0.75 -0.6
1,448,105 + DvMF_1170 0.81 +0.5
1,448,389 - -0.4
1,448,919 - DvMF_1171 0.77 +0.3
1,448,971 - DvMF_1171 0.83 -0.9
1,449,000 + DvMF_1171 0.87 +0.1
1,449,244 + -0.2
1,449,244 + -0.9
1,449,252 - -0.4
1,449,252 - -1.7

Or see this region's nucleotide sequence