Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0888

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0887 and DvMF_0888 are separated by 158 nucleotidesDvMF_0888 and DvMF_0889 overlap by 11 nucleotidesDvMF_0889 and DvMF_0890 overlap by 4 nucleotidesDvMF_0890 and DvMF_0891 overlap by 13 nucleotides DvMF_0887: DvMF_0887 - single-stranded nucleic acid binding R3H domain protein (RefSeq), at 1,070,845 to 1,072,341 _0887 DvMF_0888: DvMF_0888 - 60 kDa inner membrane insertion protein (RefSeq), at 1,072,500 to 1,074,119 _0888 DvMF_0889: DvMF_0889 - protein of unknown function DUF37 (RefSeq), at 1,074,109 to 1,074,426 _0889 DvMF_0890: DvMF_0890 - ribonuclease P protein component (RefSeq), at 1,074,423 to 1,074,965 _0890 DvMF_0891: DvMF_0891 - ribosomal protein L34 (RefSeq), at 1,074,953 to 1,075,090 _0891 Position (kb) 1072 1073 1074 1075Strain fitness (log2 ratio) -2 -1 0 1at 1071.594 kb on - strand, within DvMF_0887at 1072.083 kb on - strand, within DvMF_0887at 1072.268 kb on - strandat 1072.527 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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1,071,594 - DvMF_0887 0.50 -1.8
1,072,083 - DvMF_0887 0.83 -2.0
1,072,268 - -2.3
1,072,527 - -0.2

Or see this region's nucleotide sequence