Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0649

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDvMF_0648 and DvMF_0649 are separated by 14 nucleotidesDvMF_0649 and DvMF_0650 are separated by 484 nucleotides DvMF_0648: DvMF_0648 - formate dehydrogenase accessory protein (RefSeq), at 780,508 to 781,473 _0648 DvMF_0649: DvMF_0649 - cytochrome c class III (RefSeq), at 781,488 to 781,919 _0649 DvMF_0650: DvMF_0650 - putative transcriptional regulator, ModE family (RefSeq), at 782,404 to 782,814 _0650 Position (kb) 781 782Strain fitness (log2 ratio) -2 -1 0 1at 780.707 kb on - strand, within DvMF_0648at 780.750 kb on + strand, within DvMF_0648at 780.872 kb on + strand, within DvMF_0648at 781.099 kb on + strand, within DvMF_0648at 781.122 kb on + strand, within DvMF_0648at 781.197 kb on + strand, within DvMF_0648at 781.349 kb on + strand, within DvMF_0648at 781.393 kb on - strandat 781.393 kb on - strandat 781.472 kb on + strandat 781.588 kb on + strand, within DvMF_0649at 781.841 kb on - strand, within DvMF_0649at 782.303 kb on - strandat 782.336 kb on - strandat 782.336 kb on - strandat 782.397 kb on - strandat 782.505 kb on + strand, within DvMF_0650at 782.579 kb on - strand, within DvMF_0650at 782.621 kb on + strand, within DvMF_0650at 782.645 kb on - strand, within DvMF_0650

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
remove
780,707 - DvMF_0648 0.21 -0.3
780,750 + DvMF_0648 0.25 +0.2
780,872 + DvMF_0648 0.38 -0.7
781,099 + DvMF_0648 0.61 -0.4
781,122 + DvMF_0648 0.64 -0.5
781,197 + DvMF_0648 0.71 -0.3
781,349 + DvMF_0648 0.87 -1.0
781,393 - -0.2
781,393 - +0.4
781,472 + +0.5
781,588 + DvMF_0649 0.23 -0.7
781,841 - DvMF_0649 0.82 -1.2
782,303 - +0.1
782,336 - -0.0
782,336 - -0.5
782,397 - -0.8
782,505 + DvMF_0650 0.25 -2.2
782,579 - DvMF_0650 0.43 -1.4
782,621 + DvMF_0650 0.53 -1.2
782,645 - DvMF_0650 0.59 -1.9

Or see this region's nucleotide sequence