Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0393

Experiment: MoLS4 with D-Cycloserine 0.25 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0392 and DvMF_0393 are separated by 369 nucleotidesDvMF_0393 and DvMF_0394 are separated by 305 nucleotidesDvMF_0394 and DvMF_0395 are separated by 138 nucleotides DvMF_0392: DvMF_0392 - integral membrane sensor hybrid histidine kinase (RefSeq), at 460,888 to 463,176 _0392 DvMF_0393: DvMF_0393 - cation diffusion facilitator family transporter (RefSeq), at 463,546 to 464,997 _0393 DvMF_0394: DvMF_0394 - protein of unknown function DUF1653 (RefSeq), at 465,303 to 465,671 _0394 DvMF_0395: DvMF_0395 - protein of unknown function DUF162 (RefSeq), at 465,810 to 466,466 _0395 Position (kb) 463 464 465Strain fitness (log2 ratio) -3 -2 -1 0 1at 462.563 kb on + strand, within DvMF_0392at 462.686 kb on + strand, within DvMF_0392at 462.731 kb on - strand, within DvMF_0392at 462.766 kb on - strand, within DvMF_0392at 463.118 kb on - strandat 463.454 kb on + strandat 463.478 kb on - strandat 463.704 kb on + strand, within DvMF_0393at 463.834 kb on - strand, within DvMF_0393at 463.841 kb on + strand, within DvMF_0393at 463.864 kb on - strand, within DvMF_0393at 464.054 kb on + strand, within DvMF_0393at 464.366 kb on - strand, within DvMF_0393at 464.366 kb on - strand, within DvMF_0393at 464.633 kb on - strand, within DvMF_0393at 464.685 kb on - strand, within DvMF_0393at 464.685 kb on - strand, within DvMF_0393at 464.685 kb on - strand, within DvMF_0393at 464.838 kb on + strand, within DvMF_0393at 464.858 kb on + strandat 465.002 kb on + strandat 465.002 kb on + strandat 465.056 kb on + strandat 465.467 kb on + strand, within DvMF_0394at 465.475 kb on - strand, within DvMF_0394at 465.485 kb on + strand, within DvMF_0394at 465.493 kb on - strand, within DvMF_0394at 465.844 kb on - strandat 465.883 kb on + strand, within DvMF_0395at 465.898 kb on + strand, within DvMF_0395

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Per-strain Table

Position Strand Gene LocusTag Fraction MoLS4 with D-Cycloserine 0.25 mg/ml
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462,563 + DvMF_0392 0.73 -0.8
462,686 + DvMF_0392 0.79 -1.1
462,731 - DvMF_0392 0.81 -0.5
462,766 - DvMF_0392 0.82 +0.7
463,118 - -0.0
463,454 + -0.6
463,478 - -0.8
463,704 + DvMF_0393 0.11 +1.1
463,834 - DvMF_0393 0.20 +0.0
463,841 + DvMF_0393 0.20 -1.3
463,864 - DvMF_0393 0.22 -0.4
464,054 + DvMF_0393 0.35 -0.0
464,366 - DvMF_0393 0.56 -0.4
464,366 - DvMF_0393 0.56 -0.2
464,633 - DvMF_0393 0.75 -0.5
464,685 - DvMF_0393 0.78 +0.2
464,685 - DvMF_0393 0.78 -0.8
464,685 - DvMF_0393 0.78 -0.7
464,838 + DvMF_0393 0.89 -0.3
464,858 + -2.9
465,002 + -0.5
465,002 + -0.8
465,056 + -0.0
465,467 + DvMF_0394 0.44 -0.5
465,475 - DvMF_0394 0.47 -0.9
465,485 + DvMF_0394 0.49 -0.3
465,493 - DvMF_0394 0.51 +0.0
465,844 - -0.3
465,883 + DvMF_0395 0.11 -0.4
465,898 + DvMF_0395 0.13 -1.0

Or see this region's nucleotide sequence