Strain Fitness in Xanthomonas campestris pv. campestris strain 8004 around Xcc-8004.3830.1

Experiment: R2A with Vogels_fungal_media 0.2X

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntXcc-8004.3828.1 and Xcc-8004.3829.1 are separated by 12 nucleotidesXcc-8004.3829.1 and Xcc-8004.3830.1 are separated by 190 nucleotidesXcc-8004.3830.1 and Xcc-8004.3831.1 overlap by 1 nucleotidesXcc-8004.3831.1 and Xcc-8004.3832.1 are separated by 233 nucleotides Xcc-8004.3828.1: Xcc-8004.3828.1 - LSU ribosomal protein L27p, at 3,704,876 to 3,705,136 Xcc-8004.3828.1 Xcc-8004.3829.1: Xcc-8004.3829.1 - LSU ribosomal protein L21p, at 3,705,149 to 3,705,469 Xcc-8004.3829.1 Xcc-8004.3830.1: Xcc-8004.3830.1 - Excinuclease ABC subunit A, at 3,705,660 to 3,708,728 Xcc-8004.3830.1 Xcc-8004.3831.1: Xcc-8004.3831.1 - 4-hydroxybenzoyl-CoA thioesterase (EC 3.1.2.23), at 3,708,728 to 3,709,132 Xcc-8004.3831.1 Xcc-8004.3832.1: Xcc-8004.3832.1 - Enoyl-CoA hydratase (EC 4.2.1.17), at 3,709,366 to 3,710,136 Xcc-8004.3832.1 Position (kb) 3705 3706 3707 3708 3709Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 3704.720 kb on - strandat 3704.720 kb on - strandat 3704.720 kb on - strandat 3704.770 kb on - strandat 3704.841 kb on - strandat 3704.841 kb on - strandat 3704.878 kb on - strandat 3705.539 kb on - strandat 3705.539 kb on - strandat 3705.547 kb on - strandat 3705.671 kb on + strandat 3705.671 kb on + strandat 3705.671 kb on + strandat 3705.671 kb on + strandat 3705.672 kb on - strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.903 kb on + strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.904 kb on - strandat 3705.924 kb on + strandat 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.080 kb on + strand, within Xcc-8004.3830.1at 3706.081 kb on - strand, within Xcc-8004.3830.1at 3706.081 kb on - strand, within Xcc-8004.3830.1at 3706.081 kb on - strand, within Xcc-8004.3830.1at 3706.086 kb on + strand, within Xcc-8004.3830.1at 3706.087 kb on - strand, within Xcc-8004.3830.1at 3706.101 kb on + strand, within Xcc-8004.3830.1at 3706.101 kb on + strand, within Xcc-8004.3830.1at 3706.102 kb on - strand, within Xcc-8004.3830.1at 3706.209 kb on + strand, within Xcc-8004.3830.1at 3706.209 kb on + strand, within Xcc-8004.3830.1at 3706.209 kb on + strand, within Xcc-8004.3830.1at 3706.210 kb on - strand, within Xcc-8004.3830.1at 3706.210 kb on - strand, within Xcc-8004.3830.1at 3706.210 kb on - strand, within Xcc-8004.3830.1at 3706.210 kb on - strand, within Xcc-8004.3830.1at 3706.210 kb on - strand, within Xcc-8004.3830.1at 3706.518 kb on + strand, within Xcc-8004.3830.1at 3706.518 kb on + strand, within Xcc-8004.3830.1at 3706.518 kb on + strand, within Xcc-8004.3830.1at 3706.518 kb on + strand, within Xcc-8004.3830.1at 3706.519 kb on - strand, within Xcc-8004.3830.1at 3706.519 kb on - strand, within Xcc-8004.3830.1at 3706.519 kb on - strand, within Xcc-8004.3830.1at 3706.519 kb on - strand, within Xcc-8004.3830.1at 3706.713 kb on + strand, within Xcc-8004.3830.1at 3706.714 kb on - strand, within Xcc-8004.3830.1at 3706.716 kb on + strand, within Xcc-8004.3830.1at 3706.749 kb on + strand, within Xcc-8004.3830.1at 3706.749 kb on + strand, within Xcc-8004.3830.1at 3706.749 kb on + strand, within Xcc-8004.3830.1at 3706.749 kb on + strand, within Xcc-8004.3830.1at 3706.750 kb on - strand, within Xcc-8004.3830.1at 3706.750 kb on - strand, within Xcc-8004.3830.1at 3706.817 kb on + strand, within Xcc-8004.3830.1at 3706.845 kb on + strand, within Xcc-8004.3830.1at 3706.845 kb on + strand, within Xcc-8004.3830.1at 3706.846 kb on - strand, within Xcc-8004.3830.1at 3706.846 kb on - strand, within Xcc-8004.3830.1at 3706.846 kb on - strand, within Xcc-8004.3830.1at 3706.965 kb on + strand, within Xcc-8004.3830.1at 3706.965 kb on + strand, within Xcc-8004.3830.1at 3706.965 kb on + strand, within Xcc-8004.3830.1at 3706.965 kb on + strand, within Xcc-8004.3830.1at 3706.966 kb on - strand, within Xcc-8004.3830.1at 3707.029 kb on + strand, within Xcc-8004.3830.1at 3707.030 kb on - strand, within Xcc-8004.3830.1at 3707.196 kb on + strand, within Xcc-8004.3830.1at 3707.197 kb on - strand, within Xcc-8004.3830.1at 3707.197 kb on - strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.295 kb on + strand, within Xcc-8004.3830.1at 3707.296 kb on - strand, within Xcc-8004.3830.1at 3707.296 kb on - strand, within Xcc-8004.3830.1at 3707.296 kb on - strand, within Xcc-8004.3830.1at 3707.296 kb on - strand, within Xcc-8004.3830.1at 3707.296 kb on - strand, within Xcc-8004.3830.1at 3707.538 kb on + strand, within Xcc-8004.3830.1at 3707.538 kb on + strand, within Xcc-8004.3830.1at 3707.538 kb on + strand, within Xcc-8004.3830.1at 3707.539 kb on - strand, within Xcc-8004.3830.1at 3707.539 kb on - strand, within Xcc-8004.3830.1at 3707.539 kb on - strand, within Xcc-8004.3830.1at 3707.539 kb on - strand, within Xcc-8004.3830.1at 3707.539 kb on - strand, within Xcc-8004.3830.1at 3707.723 kb on + strand, within Xcc-8004.3830.1at 3707.724 kb on - strand, within Xcc-8004.3830.1at 3707.724 kb on - strand, within Xcc-8004.3830.1at 3707.724 kb on - strand, within Xcc-8004.3830.1at 3707.724 kb on - strand, within Xcc-8004.3830.1at 3707.724 kb on - strand, within Xcc-8004.3830.1at 3707.874 kb on + strand, within Xcc-8004.3830.1at 3707.875 kb on - strand, within Xcc-8004.3830.1at 3707.941 kb on - strand, within Xcc-8004.3830.1at 3707.941 kb on - strand, within Xcc-8004.3830.1at 3708.042 kb on + strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.043 kb on - strand, within Xcc-8004.3830.1at 3708.075 kb on + strand, within Xcc-8004.3830.1at 3708.075 kb on + strand, within Xcc-8004.3830.1at 3708.075 kb on + strand, within Xcc-8004.3830.1at 3708.076 kb on - strand, within Xcc-8004.3830.1at 3708.076 kb on - strand, within Xcc-8004.3830.1at 3708.076 kb on - strand, within Xcc-8004.3830.1at 3708.076 kb on - strand, within Xcc-8004.3830.1at 3708.076 kb on - strand, within Xcc-8004.3830.1at 3708.102 kb on + strand, within Xcc-8004.3830.1at 3708.222 kb on + strand, within Xcc-8004.3830.1at 3708.222 kb on + strand, within Xcc-8004.3830.1at 3708.223 kb on - strand, within Xcc-8004.3830.1at 3708.324 kb on + strand, within Xcc-8004.3830.1at 3708.324 kb on + strand, within Xcc-8004.3830.1at 3708.325 kb on - strand, within Xcc-8004.3830.1at 3708.325 kb on - strand, within Xcc-8004.3830.1at 3708.325 kb on - strand, within Xcc-8004.3830.1at 3708.325 kb on - strand, within Xcc-8004.3830.1at 3708.555 kb on + strandat 3708.815 kb on + strand, within Xcc-8004.3831.1at 3708.816 kb on - strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.920 kb on + strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3708.921 kb on - strand, within Xcc-8004.3831.1at 3709.040 kb on + strand, within Xcc-8004.3831.1at 3709.076 kb on - strand, within Xcc-8004.3831.1at 3709.165 kb on - strandat 3709.337 kb on + strandat 3709.337 kb on + strandat 3709.338 kb on - strandat 3709.524 kb on + strand, within Xcc-8004.3832.1at 3709.524 kb on + strand, within Xcc-8004.3832.1at 3709.712 kb on - strand, within Xcc-8004.3832.1

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Per-strain Table

Position Strand Gene LocusTag Fraction R2A with Vogels_fungal_media 0.2X
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3,704,720 - -2.1
3,704,720 - +0.5
3,704,720 - +0.1
3,704,770 - -0.7
3,704,841 - -0.3
3,704,841 - +0.7
3,704,878 - -0.3
3,705,539 - +0.6
3,705,539 - +0.3
3,705,547 - -0.3
3,705,671 + +0.1
3,705,671 + -0.3
3,705,671 + +0.7
3,705,671 + +0.6
3,705,672 - -2.1
3,705,903 + +0.4
3,705,903 + +0.4
3,705,903 + +1.5
3,705,903 + -0.9
3,705,903 + +0.5
3,705,903 + -1.4
3,705,903 + -1.9
3,705,903 + -1.5
3,705,903 + -0.2
3,705,903 + +0.9
3,705,903 + -0.5
3,705,904 - +0.7
3,705,904 - -2.1
3,705,904 - +0.4
3,705,904 - +0.5
3,705,904 - +1.5
3,705,904 - +0.7
3,705,904 - -0.0
3,705,904 - +0.7
3,705,904 - +2.1
3,705,904 - -0.9
3,705,924 + -1.4
3,706,080 + Xcc-8004.3830.1 0.14 +3.1
3,706,080 + Xcc-8004.3830.1 0.14 +0.6
3,706,080 + Xcc-8004.3830.1 0.14 -2.8
3,706,080 + Xcc-8004.3830.1 0.14 -1.4
3,706,080 + Xcc-8004.3830.1 0.14 -2.2
3,706,080 + Xcc-8004.3830.1 0.14 -0.2
3,706,081 - Xcc-8004.3830.1 0.14 +1.7
3,706,081 - Xcc-8004.3830.1 0.14 +0.4
3,706,081 - Xcc-8004.3830.1 0.14 -0.2
3,706,086 + Xcc-8004.3830.1 0.14 -0.1
3,706,087 - Xcc-8004.3830.1 0.14 +1.1
3,706,101 + Xcc-8004.3830.1 0.14 +0.2
3,706,101 + Xcc-8004.3830.1 0.14 -0.8
3,706,102 - Xcc-8004.3830.1 0.14 -0.6
3,706,209 + Xcc-8004.3830.1 0.18 -0.3
3,706,209 + Xcc-8004.3830.1 0.18 +1.1
3,706,209 + Xcc-8004.3830.1 0.18 +0.2
3,706,210 - Xcc-8004.3830.1 0.18 -0.6
3,706,210 - Xcc-8004.3830.1 0.18 -1.5
3,706,210 - Xcc-8004.3830.1 0.18 -0.2
3,706,210 - Xcc-8004.3830.1 0.18 +1.8
3,706,210 - Xcc-8004.3830.1 0.18 +1.0
3,706,518 + Xcc-8004.3830.1 0.28 -1.1
3,706,518 + Xcc-8004.3830.1 0.28 +1.0
3,706,518 + Xcc-8004.3830.1 0.28 -0.5
3,706,518 + Xcc-8004.3830.1 0.28 -0.8
3,706,519 - Xcc-8004.3830.1 0.28 -0.5
3,706,519 - Xcc-8004.3830.1 0.28 -1.2
3,706,519 - Xcc-8004.3830.1 0.28 -0.3
3,706,519 - Xcc-8004.3830.1 0.28 +0.7
3,706,713 + Xcc-8004.3830.1 0.34 +0.8
3,706,714 - Xcc-8004.3830.1 0.34 -0.1
3,706,716 + Xcc-8004.3830.1 0.34 +1.3
3,706,749 + Xcc-8004.3830.1 0.35 +0.6
3,706,749 + Xcc-8004.3830.1 0.35 +0.1
3,706,749 + Xcc-8004.3830.1 0.35 -1.5
3,706,749 + Xcc-8004.3830.1 0.35 -0.4
3,706,750 - Xcc-8004.3830.1 0.36 -1.3
3,706,750 - Xcc-8004.3830.1 0.36 +2.7
3,706,817 + Xcc-8004.3830.1 0.38 -1.9
3,706,845 + Xcc-8004.3830.1 0.39 -1.3
3,706,845 + Xcc-8004.3830.1 0.39 -2.6
3,706,846 - Xcc-8004.3830.1 0.39 -1.7
3,706,846 - Xcc-8004.3830.1 0.39 +0.4
3,706,846 - Xcc-8004.3830.1 0.39 +1.8
3,706,965 + Xcc-8004.3830.1 0.43 -2.4
3,706,965 + Xcc-8004.3830.1 0.43 -0.6
3,706,965 + Xcc-8004.3830.1 0.43 -0.0
3,706,965 + Xcc-8004.3830.1 0.43 +3.1
3,706,966 - Xcc-8004.3830.1 0.43 +1.0
3,707,029 + Xcc-8004.3830.1 0.45 +0.9
3,707,030 - Xcc-8004.3830.1 0.45 -0.1
3,707,196 + Xcc-8004.3830.1 0.50 +1.7
3,707,197 - Xcc-8004.3830.1 0.50 +0.1
3,707,197 - Xcc-8004.3830.1 0.50 +1.4
3,707,295 + Xcc-8004.3830.1 0.53 +2.7
3,707,295 + Xcc-8004.3830.1 0.53 +0.1
3,707,295 + Xcc-8004.3830.1 0.53 -1.4
3,707,295 + Xcc-8004.3830.1 0.53 -0.4
3,707,295 + Xcc-8004.3830.1 0.53 +0.5
3,707,295 + Xcc-8004.3830.1 0.53 -0.5
3,707,295 + Xcc-8004.3830.1 0.53 -1.1
3,707,296 - Xcc-8004.3830.1 0.53 -2.1
3,707,296 - Xcc-8004.3830.1 0.53 +0.0
3,707,296 - Xcc-8004.3830.1 0.53 -0.9
3,707,296 - Xcc-8004.3830.1 0.53 +0.7
3,707,296 - Xcc-8004.3830.1 0.53 +1.7
3,707,538 + Xcc-8004.3830.1 0.61 -2.8
3,707,538 + Xcc-8004.3830.1 0.61 -0.6
3,707,538 + Xcc-8004.3830.1 0.61 -0.3
3,707,539 - Xcc-8004.3830.1 0.61 +0.0
3,707,539 - Xcc-8004.3830.1 0.61 -0.3
3,707,539 - Xcc-8004.3830.1 0.61 +0.1
3,707,539 - Xcc-8004.3830.1 0.61 -0.1
3,707,539 - Xcc-8004.3830.1 0.61 -0.1
3,707,723 + Xcc-8004.3830.1 0.67 -0.9
3,707,724 - Xcc-8004.3830.1 0.67 +0.7
3,707,724 - Xcc-8004.3830.1 0.67 -0.2
3,707,724 - Xcc-8004.3830.1 0.67 -0.0
3,707,724 - Xcc-8004.3830.1 0.67 +0.5
3,707,724 - Xcc-8004.3830.1 0.67 +0.8
3,707,874 + Xcc-8004.3830.1 0.72 +1.7
3,707,875 - Xcc-8004.3830.1 0.72 +2.7
3,707,941 - Xcc-8004.3830.1 0.74 -0.2
3,707,941 - Xcc-8004.3830.1 0.74 +0.8
3,708,042 + Xcc-8004.3830.1 0.78 -1.7
3,708,043 - Xcc-8004.3830.1 0.78 +2.0
3,708,043 - Xcc-8004.3830.1 0.78 -2.1
3,708,043 - Xcc-8004.3830.1 0.78 -0.6
3,708,043 - Xcc-8004.3830.1 0.78 -1.5
3,708,043 - Xcc-8004.3830.1 0.78 -1.2
3,708,043 - Xcc-8004.3830.1 0.78 +0.7
3,708,043 - Xcc-8004.3830.1 0.78 -1.4
3,708,075 + Xcc-8004.3830.1 0.79 +0.5
3,708,075 + Xcc-8004.3830.1 0.79 +0.7
3,708,075 + Xcc-8004.3830.1 0.79 -0.2
3,708,076 - Xcc-8004.3830.1 0.79 -1.5
3,708,076 - Xcc-8004.3830.1 0.79 -1.0
3,708,076 - Xcc-8004.3830.1 0.79 +0.3
3,708,076 - Xcc-8004.3830.1 0.79 -0.2
3,708,076 - Xcc-8004.3830.1 0.79 -0.6
3,708,102 + Xcc-8004.3830.1 0.80 -0.4
3,708,222 + Xcc-8004.3830.1 0.83 +1.3
3,708,222 + Xcc-8004.3830.1 0.83 -0.2
3,708,223 - Xcc-8004.3830.1 0.84 -0.5
3,708,324 + Xcc-8004.3830.1 0.87 -0.8
3,708,324 + Xcc-8004.3830.1 0.87 +0.2
3,708,325 - Xcc-8004.3830.1 0.87 -1.8
3,708,325 - Xcc-8004.3830.1 0.87 -0.6
3,708,325 - Xcc-8004.3830.1 0.87 -0.1
3,708,325 - Xcc-8004.3830.1 0.87 -0.9
3,708,555 + +0.5
3,708,815 + Xcc-8004.3831.1 0.21 -0.8
3,708,816 - Xcc-8004.3831.1 0.22 -0.5
3,708,920 + Xcc-8004.3831.1 0.47 +0.1
3,708,920 + Xcc-8004.3831.1 0.47 -2.3
3,708,920 + Xcc-8004.3831.1 0.47 +2.1
3,708,920 + Xcc-8004.3831.1 0.47 -0.8
3,708,920 + Xcc-8004.3831.1 0.47 -0.6
3,708,920 + Xcc-8004.3831.1 0.47 -2.3
3,708,921 - Xcc-8004.3831.1 0.48 -0.8
3,708,921 - Xcc-8004.3831.1 0.48 -0.4
3,708,921 - Xcc-8004.3831.1 0.48 -0.7
3,708,921 - Xcc-8004.3831.1 0.48 -0.2
3,709,040 + Xcc-8004.3831.1 0.77 -0.1
3,709,076 - Xcc-8004.3831.1 0.86 -0.6
3,709,165 - -0.5
3,709,337 + -1.8
3,709,337 + +0.4
3,709,338 - -0.4
3,709,524 + Xcc-8004.3832.1 0.20 +0.3
3,709,524 + Xcc-8004.3832.1 0.20 -1.6
3,709,712 - Xcc-8004.3832.1 0.45 +0.9

Or see this region's nucleotide sequence