Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_1376

Experiment: BG11 with nitrate 200 mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BG11 with nitrate 200 mM
1,415,736	+	rluA	Synpcc7942_1374	0.89	+0.4
1,415,738	+	rluA	Synpcc7942_1374	0.89	-0.4
1,415,758	+				+0.5
1,415,776	-				+0.6
1,415,776	-				-1.6
1,415,785	+				-0.7
1,415,794	+				+0.4
1,415,794	+				+0.3
1,415,794	+				-0.1
1,415,797	-				-1.7
1,415,797	-				+0.3
1,415,797	-				+0.2
1,415,797	-				-1.3
1,415,802	-				+0.5
1,415,834	-				-1.1
1,415,835	-				+2.0
1,415,849	+				-0.7
1,415,849	+				-0.9
1,415,857	-				+0.6
1,415,857	-				-2.6
1,415,857	-				-0.1
1,415,857	-				-0.4
1,415,857	-				+3.4
1,415,857	-				+0.4
1,415,893	-				-1.3
1,415,893	-				+0.7
1,415,902	-				+1.2
1,415,945	+				-0.7
1,415,945	+				-0.6
1,415,953	-				+0.7
1,415,953	-				-1.6
1,415,953	-				-0.5
1,415,953	-				-0.3
1,415,965	+				+0.7
1,415,966	+				+0.1
1,415,973	-				+2.5
1,415,974	-				-0.7
1,415,980	+				-1.4
1,415,980	+				-0.2
1,415,987	+				+0.0
1,416,018	-				+1.2
1,416,040	+		Synpcc7942_1375	0.11	-1.3
1,416,045	+		Synpcc7942_1375	0.11	+0.1
1,416,058	+		Synpcc7942_1375	0.14	-0.7
1,416,077	+		Synpcc7942_1375	0.18	+0.5
1,416,077	+		Synpcc7942_1375	0.18	+0.2
1,416,085	-		Synpcc7942_1375	0.19	+5.2
1,416,097	+		Synpcc7942_1375	0.21	+1.1
1,416,130	+		Synpcc7942_1375	0.28	+0.8
1,416,145	-		Synpcc7942_1375	0.31	-1.4
1,416,147	+		Synpcc7942_1375	0.31	-1.1
1,416,151	+		Synpcc7942_1375	0.32	+0.8
1,416,184	+		Synpcc7942_1375	0.38	+0.2
1,416,184	+		Synpcc7942_1375	0.38	-1.8
1,416,203	+		Synpcc7942_1375	0.42	-0.7
1,416,210	+		Synpcc7942_1375	0.43	+0.9
1,416,210	+		Synpcc7942_1375	0.43	+1.2
1,416,218	-		Synpcc7942_1375	0.45	-0.7
1,416,248	-		Synpcc7942_1375	0.50	-1.6
1,416,248	-		Synpcc7942_1375	0.50	+0.0
1,416,264	+		Synpcc7942_1375	0.53	+1.0
1,416,264	+		Synpcc7942_1375	0.53	-1.0
1,416,275	-		Synpcc7942_1375	0.56	-3.2
1,416,282	-		Synpcc7942_1375	0.57	-1.3
1,416,324	+		Synpcc7942_1375	0.65	-2.1
1,416,342	+		Synpcc7942_1375	0.68	+1.0
1,416,342	+		Synpcc7942_1375	0.68	+1.3
1,416,365	-		Synpcc7942_1375	0.73	-1.2
1,416,366	+		Synpcc7942_1375	0.73	+0.9
1,416,367	+		Synpcc7942_1375	0.73	-1.0
1,416,382	-		Synpcc7942_1375	0.76	+0.2
1,416,404	-		Synpcc7942_1375	0.80	+1.7
1,416,411	+		Synpcc7942_1375	0.82	+0.4
1,416,419	-		Synpcc7942_1375	0.83	-1.8
1,416,479	+				+1.9
1,416,494	+				-0.1
1,416,494	+				-0.5
1,416,494	+				+1.2
1,416,494	+				+0.2
1,416,496	+				-0.8
1,416,502	-				-1.4
1,416,536	+				+0.2
1,416,544	-				-0.0
1,416,566	-				-0.5
1,416,578	+				-0.0
1,416,584	+				+0.0
1,416,584	-				+0.8
1,416,606	-				-0.6
1,416,608	+				+0.4
1,416,608	+				-0.8
1,416,616	-				+0.7
1,416,616	-				+2.0
1,416,616	-				-0.6
1,416,616	-				-1.5
1,416,633	-				+0.0
1,416,639	+				+0.6
1,416,662	-				+0.1
1,416,664	+				-0.6
1,416,672	-				+0.4
1,416,708	+				-0.1
1,416,729	-				-0.7
1,416,783	-		Synpcc7942_1376	0.13	-1.7
1,416,789	-		Synpcc7942_1376	0.14	-1.0
1,416,791	+		Synpcc7942_1376	0.14	-1.8
1,416,793	+		Synpcc7942_1376	0.15	-0.8
1,416,817	+		Synpcc7942_1376	0.19	-1.1
1,416,817	+		Synpcc7942_1376	0.19	-0.8
1,416,825	-		Synpcc7942_1376	0.20	-1.8
1,416,835	+		Synpcc7942_1376	0.22	+0.8
1,416,843	-		Synpcc7942_1376	0.23	+1.6
1,416,853	+		Synpcc7942_1376	0.25	-0.1
1,416,861	-		Synpcc7942_1376	0.26	+0.5
1,416,861	-		Synpcc7942_1376	0.26	+0.6
1,416,861	-		Synpcc7942_1376	0.26	-0.3
1,416,905	+		Synpcc7942_1376	0.33	-0.1
1,416,912	+		Synpcc7942_1376	0.35	+0.9
1,416,912	+		Synpcc7942_1376	0.35	+1.1
1,416,920	-		Synpcc7942_1376	0.36	-1.3
1,416,928	+		Synpcc7942_1376	0.37	+0.5
1,416,931	-		Synpcc7942_1376	0.38	-2.0
1,416,931	-		Synpcc7942_1376	0.38	-0.1
1,416,982	+		Synpcc7942_1376	0.46	-0.6
1,416,990	-		Synpcc7942_1376	0.48	-0.5
1,417,033	+		Synpcc7942_1376	0.55	+0.7
1,417,033	+		Synpcc7942_1376	0.55	-2.2
1,417,034	+		Synpcc7942_1376	0.55	+0.4
1,417,036	-		Synpcc7942_1376	0.55	+0.7
1,417,041	-		Synpcc7942_1376	0.56	+0.6
1,417,041	-		Synpcc7942_1376	0.56	-0.2
1,417,042	+		Synpcc7942_1376	0.56	-0.6
1,417,042	-		Synpcc7942_1376	0.56	+0.3
1,417,043	+		Synpcc7942_1376	0.56	+1.0
1,417,046	-		Synpcc7942_1376	0.57	+0.2
1,417,056	-		Synpcc7942_1376	0.59	-1.6
1,417,067	+		Synpcc7942_1376	0.60	-1.7
1,417,067	+		Synpcc7942_1376	0.60	+0.2
1,417,077	-		Synpcc7942_1376	0.62	-0.1
1,417,086	-		Synpcc7942_1376	0.64	+0.3
1,417,097	-		Synpcc7942_1376	0.65	+0.5
1,417,105	+		Synpcc7942_1376	0.67	+0.0
1,417,110	+		Synpcc7942_1376	0.68	-1.2
1,417,110	+		Synpcc7942_1376	0.68	+1.9
1,417,110	+		Synpcc7942_1376	0.68	+0.4
1,417,110	+		Synpcc7942_1376	0.68	+0.6
1,417,118	-		Synpcc7942_1376	0.69	-1.2
1,417,118	-		Synpcc7942_1376	0.69	-1.0
1,417,118	-		Synpcc7942_1376	0.69	+0.2
1,417,119	-		Synpcc7942_1376	0.69	+0.6
1,417,121	+		Synpcc7942_1376	0.70	-1.0
1,417,121	+		Synpcc7942_1376	0.70	-4.7
1,417,121	+		Synpcc7942_1376	0.70	+1.3
1,417,121	+		Synpcc7942_1376	0.70	+0.2
1,417,129	-		Synpcc7942_1376	0.71	+1.2
1,417,158	-		Synpcc7942_1376	0.76	-0.0
1,417,159	+		Synpcc7942_1376	0.76	+0.3
1,417,165	-		Synpcc7942_1376	0.77	+0.9
1,417,165	-		Synpcc7942_1376	0.77	-2.0
1,417,165	-		Synpcc7942_1376	0.77	+0.5
1,417,167	+		Synpcc7942_1376	0.77	-1.4
1,417,167	+		Synpcc7942_1376	0.77	+1.7
1,417,167	+		Synpcc7942_1376	0.77	-1.3
1,417,180	-		Synpcc7942_1376	0.79	+0.4
1,417,217	+		Synpcc7942_1376	0.86	+0.2
1,417,220	-		Synpcc7942_1376	0.86	-1.0
1,417,225	-		Synpcc7942_1376	0.87	+0.4
1,417,227	+		Synpcc7942_1376	0.87	+0.9
1,417,256	+				+0.5
1,417,283	+				+1.1
1,417,296	+				+2.9
1,417,309	+				+1.6
1,417,318	+				-0.3
1,417,392	+				+0.7
1,417,433	-				+0.6
1,417,435	+				+0.6
1,417,441	+				+1.2
1,417,441	-				+0.5
1,417,442	-				+0.9
1,417,466	-				+0.5
1,417,473	+				-0.9
1,417,502	+				+0.3
1,417,513	+				+0.4
1,417,587	-				+1.8
1,417,646	+				-0.5
1,417,680	-				-1.2
1,417,688	-				-1.2
1,417,701	-				-1.4
1,417,710	+				+0.2
1,417,710	-				-3.6
1,417,779	+		Synpcc7942_1377	0.10	-2.0
1,417,794	+		Synpcc7942_1377	0.11	-3.7
1,417,802	-		Synpcc7942_1377	0.11	-2.5
1,417,887	+		Synpcc7942_1377	0.15	-1.8
1,417,963	+		Synpcc7942_1377	0.18	-3.0
1,417,982	+		Synpcc7942_1377	0.19	-1.7
1,418,037	-		Synpcc7942_1377	0.21	-1.6
1,418,037	-		Synpcc7942_1377	0.21	-0.8
1,418,235	-		Synpcc7942_1377	0.30	-1.6
1,418,242	+		Synpcc7942_1377	0.30	-1.8
1,418,250	-		Synpcc7942_1377	0.30	-0.1