Experiment: BG11 with nitrate 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Synpcc7942_0661 and Synpcc7942_0662 are separated by 68 nucleotides Synpcc7942_0662 and cya2 are separated by 119 nucleotides
Synpcc7942_0661: Synpcc7942_0661 - hypothetical protein, at 656,270 to 657,874
_0661
Synpcc7942_0662: Synpcc7942_0662 - hypothetical protein, at 657,943 to 658,857
_0662
Synpcc7942_0663: cya2 - putative adenylate/guanylate cyclase, at 658,977 to 660,875
cya2
Position (kb) 657
658
659 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 656.944 kb on + strand, within Synpcc7942_0661 at 656.978 kb on - strand, within Synpcc7942_0661 at 656.992 kb on + strand, within Synpcc7942_0661 at 656.992 kb on + strand, within Synpcc7942_0661 at 656.992 kb on + strand at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.000 kb on - strand, within Synpcc7942_0661 at 657.054 kb on - strand, within Synpcc7942_0661 at 657.100 kb on + strand, within Synpcc7942_0661 at 657.121 kb on + strand, within Synpcc7942_0661 at 657.121 kb on + strand, within Synpcc7942_0661 at 657.126 kb on + strand, within Synpcc7942_0661 at 657.142 kb on - strand, within Synpcc7942_0661 at 657.143 kb on + strand, within Synpcc7942_0661 at 657.151 kb on + strand, within Synpcc7942_0661 at 657.152 kb on + strand, within Synpcc7942_0661 at 657.159 kb on + strand, within Synpcc7942_0661 at 657.229 kb on + strand, within Synpcc7942_0661 at 657.243 kb on - strand, within Synpcc7942_0661 at 657.271 kb on + strand, within Synpcc7942_0661 at 657.271 kb on + strand, within Synpcc7942_0661 at 657.279 kb on - strand, within Synpcc7942_0661 at 657.292 kb on + strand, within Synpcc7942_0661 at 657.295 kb on + strand, within Synpcc7942_0661 at 657.303 kb on - strand, within Synpcc7942_0661 at 657.303 kb on - strand, within Synpcc7942_0661 at 657.329 kb on + strand at 657.340 kb on + strand, within Synpcc7942_0661 at 657.340 kb on + strand, within Synpcc7942_0661 at 657.340 kb on + strand, within Synpcc7942_0661 at 657.340 kb on + strand, within Synpcc7942_0661 at 657.348 kb on - strand, within Synpcc7942_0661 at 657.358 kb on - strand, within Synpcc7942_0661 at 657.375 kb on + strand, within Synpcc7942_0661 at 657.407 kb on - strand, within Synpcc7942_0661 at 657.437 kb on + strand, within Synpcc7942_0661 at 657.437 kb on + strand, within Synpcc7942_0661 at 657.442 kb on + strand, within Synpcc7942_0661 at 657.442 kb on + strand, within Synpcc7942_0661 at 657.445 kb on - strand, within Synpcc7942_0661 at 657.445 kb on - strand, within Synpcc7942_0661 at 657.450 kb on - strand, within Synpcc7942_0661 at 657.450 kb on - strand, within Synpcc7942_0661 at 657.469 kb on + strand, within Synpcc7942_0661 at 657.474 kb on + strand, within Synpcc7942_0661 at 657.482 kb on - strand, within Synpcc7942_0661 at 657.482 kb on - strand, within Synpcc7942_0661 at 657.484 kb on + strand, within Synpcc7942_0661 at 657.560 kb on + strand, within Synpcc7942_0661 at 657.583 kb on + strand, within Synpcc7942_0661 at 657.584 kb on + strand, within Synpcc7942_0661 at 657.584 kb on + strand, within Synpcc7942_0661 at 657.584 kb on + strand, within Synpcc7942_0661 at 657.584 kb on + strand, within Synpcc7942_0661 at 657.586 kb on + strand, within Synpcc7942_0661 at 657.592 kb on - strand, within Synpcc7942_0661 at 657.592 kb on - strand, within Synpcc7942_0661 at 657.592 kb on - strand, within Synpcc7942_0661 at 657.592 kb on - strand, within Synpcc7942_0661 at 657.592 kb on - strand, within Synpcc7942_0661 at 657.594 kb on - strand, within Synpcc7942_0661 at 657.594 kb on - strand, within Synpcc7942_0661 at 657.594 kb on - strand, within Synpcc7942_0661 at 657.597 kb on - strand, within Synpcc7942_0661 at 657.607 kb on - strand, within Synpcc7942_0661 at 657.609 kb on + strand, within Synpcc7942_0661 at 657.611 kb on + strand, within Synpcc7942_0661 at 657.611 kb on + strand, within Synpcc7942_0661 at 657.619 kb on - strand, within Synpcc7942_0661 at 657.619 kb on - strand, within Synpcc7942_0661 at 657.626 kb on + strand, within Synpcc7942_0661 at 657.656 kb on + strand, within Synpcc7942_0661 at 657.656 kb on + strand, within Synpcc7942_0661 at 657.663 kb on + strand, within Synpcc7942_0661 at 657.664 kb on - strand at 657.664 kb on - strand, within Synpcc7942_0661 at 657.664 kb on - strand, within Synpcc7942_0661 at 657.669 kb on - strand, within Synpcc7942_0661 at 657.724 kb on - strand at 657.736 kb on - strand at 657.745 kb on + strand at 657.745 kb on + strand at 657.753 kb on - strand at 657.799 kb on + strand at 657.869 kb on + strand at 657.876 kb on + strand at 657.883 kb on + strand at 657.902 kb on + strand at 657.912 kb on + strand at 657.920 kb on - strand at 657.924 kb on + strand at 657.932 kb on + strand at 657.967 kb on + strand at 657.967 kb on + strand at 657.967 kb on + strand at 657.967 kb on + strand at 657.967 kb on + strand at 657.975 kb on - strand at 657.975 kb on - strand at 657.982 kb on - strand at 657.982 kb on - strand at 657.984 kb on + strand at 657.990 kb on - strand at 657.992 kb on - strand at 657.992 kb on - strand at 658.000 kb on + strand at 658.000 kb on - strand at 658.003 kb on - strand at 658.013 kb on - strand at 658.043 kb on - strand, within Synpcc7942_0662 at 658.063 kb on + strand, within Synpcc7942_0662 at 658.118 kb on + strand, within Synpcc7942_0662 at 658.194 kb on - strand, within Synpcc7942_0662 at 658.246 kb on - strand, within Synpcc7942_0662 at 658.286 kb on + strand, within Synpcc7942_0662 at 658.329 kb on + strand, within Synpcc7942_0662 at 658.337 kb on - strand, within Synpcc7942_0662 at 658.397 kb on + strand, within Synpcc7942_0662 at 658.399 kb on + strand, within Synpcc7942_0662 at 658.405 kb on - strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.412 kb on + strand, within Synpcc7942_0662 at 658.415 kb on - strand, within Synpcc7942_0662 at 658.423 kb on + strand, within Synpcc7942_0662 at 658.442 kb on + strand, within Synpcc7942_0662 at 658.485 kb on + strand, within Synpcc7942_0662 at 658.560 kb on + strand at 658.579 kb on + strand, within Synpcc7942_0662 at 658.586 kb on - strand, within Synpcc7942_0662 at 658.610 kb on - strand, within Synpcc7942_0662 at 658.646 kb on + strand, within Synpcc7942_0662 at 658.646 kb on + strand, within Synpcc7942_0662 at 658.654 kb on - strand, within Synpcc7942_0662 at 658.663 kb on - strand, within Synpcc7942_0662 at 658.708 kb on - strand, within Synpcc7942_0662 at 658.720 kb on - strand, within Synpcc7942_0662 at 658.724 kb on + strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.727 kb on - strand, within Synpcc7942_0662 at 658.755 kb on - strand, within Synpcc7942_0662 at 658.762 kb on + strand, within Synpcc7942_0662 at 658.816 kb on + strand at 658.825 kb on - strand at 658.825 kb on - strand at 658.826 kb on + strand at 658.876 kb on - strand at 658.879 kb on + strand at 658.887 kb on - strand at 658.903 kb on + strand at 658.903 kb on + strand at 658.911 kb on - strand at 658.920 kb on + strand at 658.952 kb on - strand at 658.952 kb on - strand at 658.952 kb on - strand at 658.954 kb on + strand at 658.959 kb on - strand at 658.980 kb on + strand at 658.993 kb on - strand at 658.993 kb on - strand at 659.021 kb on + strand at 659.047 kb on - strand at 659.056 kb on + strand at 659.064 kb on - strand at 659.079 kb on - strand at 659.083 kb on - strand at 659.120 kb on + strand at 659.120 kb on + strand at 659.120 kb on - strand at 659.122 kb on + strand at 659.122 kb on + strand at 659.125 kb on - strand at 659.153 kb on + strand at 659.231 kb on + strand, within cya2 at 659.231 kb on + strand, within cya2 at 659.231 kb on - strand, within cya2 at 659.231 kb on - strand, within cya2 at 659.238 kb on - strand, within cya2 at 659.239 kb on - strand, within cya2 at 659.259 kb on + strand, within cya2 at 659.310 kb on + strand, within cya2 at 659.369 kb on + strand, within cya2 at 659.379 kb on + strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.392 kb on - strand, within cya2 at 659.423 kb on - strand, within cya2 at 659.429 kb on + strand, within cya2 at 659.446 kb on + strand, within cya2 at 659.452 kb on + strand, within cya2 at 659.459 kb on - strand, within cya2 at 659.479 kb on + strand, within cya2 at 659.479 kb on + strand, within cya2 at 659.487 kb on - strand, within cya2 at 659.503 kb on + strand at 659.545 kb on - strand, within cya2 at 659.550 kb on - strand, within cya2 at 659.640 kb on + strand, within cya2 at 659.650 kb on + strand, within cya2 at 659.650 kb on + strand, within cya2 at 659.653 kb on - strand, within cya2 at 659.658 kb on - strand, within cya2 at 659.658 kb on - strand, within cya2 at 659.678 kb on + strand, within cya2 at 659.702 kb on - strand, within cya2 at 659.721 kb on + strand, within cya2 at 659.721 kb on + strand, within cya2 at 659.729 kb on - strand, within cya2 at 659.755 kb on - strand, within cya2 at 659.780 kb on + strand, within cya2 at 659.795 kb on + strand, within cya2 at 659.795 kb on + strand, within cya2 at 659.797 kb on + strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.803 kb on - strand, within cya2 at 659.805 kb on + strand, within cya2 at 659.805 kb on + strand at 659.813 kb on - strand, within cya2 at 659.813 kb on - strand, within cya2 at 659.818 kb on - strand, within cya2 at 659.840 kb on + strand, within cya2 at 659.857 kb on + strand, within cya2
Per-strain Table
Position Strand Gene LocusTag Fraction BG11 with nitrate 200 mM remove 656,944 + Synpcc7942_0661 0.42 -1.0 656,978 - Synpcc7942_0661 0.44 +0.2 656,992 + Synpcc7942_0661 0.45 +1.2 656,992 + Synpcc7942_0661 0.45 -1.2 656,992 + -0.5 657,000 - Synpcc7942_0661 0.45 -0.2 657,000 - Synpcc7942_0661 0.45 -0.2 657,000 - Synpcc7942_0661 0.45 -0.7 657,000 - Synpcc7942_0661 0.45 -0.4 657,000 - Synpcc7942_0661 0.45 -0.2 657,000 - Synpcc7942_0661 0.45 -0.2 657,000 - Synpcc7942_0661 0.45 -0.7 657,054 - Synpcc7942_0661 0.49 -0.2 657,100 + Synpcc7942_0661 0.52 -1.4 657,121 + Synpcc7942_0661 0.53 -0.2 657,121 + Synpcc7942_0661 0.53 -0.2 657,126 + Synpcc7942_0661 0.53 -0.8 657,142 - Synpcc7942_0661 0.54 -2.5 657,143 + Synpcc7942_0661 0.54 -2.4 657,151 + Synpcc7942_0661 0.55 -0.7 657,152 + Synpcc7942_0661 0.55 +0.2 657,159 + Synpcc7942_0661 0.55 -1.7 657,229 + Synpcc7942_0661 0.60 -1.4 657,243 - Synpcc7942_0661 0.61 -0.1 657,271 + Synpcc7942_0661 0.62 -2.3 657,271 + Synpcc7942_0661 0.62 -0.1 657,279 - Synpcc7942_0661 0.63 -0.6 657,292 + Synpcc7942_0661 0.64 +0.3 657,295 + Synpcc7942_0661 0.64 -0.9 657,303 - Synpcc7942_0661 0.64 +0.4 657,303 - Synpcc7942_0661 0.64 -0.7 657,329 + +1.2 657,340 + Synpcc7942_0661 0.67 +2.5 657,340 + Synpcc7942_0661 0.67 -1.1 657,340 + Synpcc7942_0661 0.67 -0.2 657,340 + Synpcc7942_0661 0.67 +0.2 657,348 - Synpcc7942_0661 0.67 +0.1 657,358 - Synpcc7942_0661 0.68 +1.2 657,375 + Synpcc7942_0661 0.69 -1.4 657,407 - Synpcc7942_0661 0.71 +1.5 657,437 + Synpcc7942_0661 0.73 +0.2 657,437 + Synpcc7942_0661 0.73 -1.8 657,442 + Synpcc7942_0661 0.73 +0.6 657,442 + Synpcc7942_0661 0.73 +1.1 657,445 - Synpcc7942_0661 0.73 -0.8 657,445 - Synpcc7942_0661 0.73 -0.5 657,450 - Synpcc7942_0661 0.74 +0.3 657,450 - Synpcc7942_0661 0.74 -0.7 657,469 + Synpcc7942_0661 0.75 +0.1 657,474 + Synpcc7942_0661 0.75 -0.5 657,482 - Synpcc7942_0661 0.76 -0.3 657,482 - Synpcc7942_0661 0.76 +0.1 657,484 + Synpcc7942_0661 0.76 -0.8 657,560 + Synpcc7942_0661 0.80 +0.5 657,583 + Synpcc7942_0661 0.82 +0.1 657,584 + Synpcc7942_0661 0.82 -0.4 657,584 + Synpcc7942_0661 0.82 +1.1 657,584 + Synpcc7942_0661 0.82 -2.1 657,584 + Synpcc7942_0661 0.82 +0.7 657,586 + Synpcc7942_0661 0.82 +1.6 657,592 - Synpcc7942_0661 0.82 +0.3 657,592 - Synpcc7942_0661 0.82 -1.0 657,592 - Synpcc7942_0661 0.82 +0.2 657,592 - Synpcc7942_0661 0.82 -3.1 657,592 - Synpcc7942_0661 0.82 -1.4 657,594 - Synpcc7942_0661 0.82 +0.1 657,594 - Synpcc7942_0661 0.82 -0.8 657,594 - Synpcc7942_0661 0.82 -0.3 657,597 - Synpcc7942_0661 0.83 -0.3 657,607 - Synpcc7942_0661 0.83 +0.2 657,609 + Synpcc7942_0661 0.83 -1.8 657,611 + Synpcc7942_0661 0.84 +0.7 657,611 + Synpcc7942_0661 0.84 -0.6 657,619 - Synpcc7942_0661 0.84 +0.1 657,619 - Synpcc7942_0661 0.84 -1.9 657,626 + Synpcc7942_0661 0.84 +1.3 657,656 + Synpcc7942_0661 0.86 -0.3 657,656 + Synpcc7942_0661 0.86 +0.3 657,663 + Synpcc7942_0661 0.87 -3.1 657,664 - +1.2 657,664 - Synpcc7942_0661 0.87 +0.3 657,664 - Synpcc7942_0661 0.87 -0.2 657,669 - Synpcc7942_0661 0.87 -2.3 657,724 - -0.7 657,736 - +2.5 657,745 + +0.1 657,745 + -0.8 657,753 - -1.0 657,799 + -0.1 657,869 + +1.1 657,876 + -0.1 657,883 + +1.2 657,902 + -0.1 657,912 + +0.3 657,920 - -1.5 657,924 + -1.1 657,932 + +0.4 657,967 + -1.2 657,967 + +0.5 657,967 + +1.9 657,967 + +0.3 657,967 + +1.5 657,975 - +0.9 657,975 - -1.3 657,982 - -1.6 657,982 - +0.9 657,984 + -0.1 657,990 - +2.2 657,992 - +0.6 657,992 - -0.6 658,000 + +0.6 658,000 - -0.3 658,003 - +1.8 658,013 - -1.4 658,043 - Synpcc7942_0662 0.11 +1.7 658,063 + Synpcc7942_0662 0.13 -0.8 658,118 + Synpcc7942_0662 0.19 -1.4 658,194 - Synpcc7942_0662 0.27 -1.0 658,246 - Synpcc7942_0662 0.33 +1.7 658,286 + Synpcc7942_0662 0.37 +1.3 658,329 + Synpcc7942_0662 0.42 +0.8 658,337 - Synpcc7942_0662 0.43 +1.1 658,397 + Synpcc7942_0662 0.50 +0.3 658,399 + Synpcc7942_0662 0.50 -1.7 658,405 - Synpcc7942_0662 0.50 +0.4 658,412 + Synpcc7942_0662 0.51 +1.7 658,412 + Synpcc7942_0662 0.51 -0.2 658,412 + Synpcc7942_0662 0.51 +0.5 658,415 - Synpcc7942_0662 0.52 +1.0 658,423 + Synpcc7942_0662 0.52 +0.5 658,442 + Synpcc7942_0662 0.55 -1.5 658,485 + Synpcc7942_0662 0.59 +0.3 658,560 + -0.7 658,579 + Synpcc7942_0662 0.70 +1.1 658,586 - Synpcc7942_0662 0.70 +1.1 658,610 - Synpcc7942_0662 0.73 -0.3 658,646 + Synpcc7942_0662 0.77 +0.1 658,646 + Synpcc7942_0662 0.77 -0.2 658,654 - Synpcc7942_0662 0.78 +0.1 658,663 - Synpcc7942_0662 0.79 -1.7 658,708 - Synpcc7942_0662 0.84 -1.0 658,720 - Synpcc7942_0662 0.85 +0.9 658,724 + Synpcc7942_0662 0.85 -0.0 658,727 - Synpcc7942_0662 0.86 -1.2 658,727 - Synpcc7942_0662 0.86 -0.6 658,727 - Synpcc7942_0662 0.86 +0.7 658,727 - Synpcc7942_0662 0.86 +0.9 658,755 - Synpcc7942_0662 0.89 -0.8 658,762 + Synpcc7942_0662 0.90 +1.2 658,816 + +0.4 658,825 - +0.2 658,825 - +0.6 658,826 + +0.5 658,876 - -0.3 658,879 + +0.5 658,887 - +0.1 658,903 + +0.2 658,903 + +0.2 658,911 - -0.0 658,920 + -0.0 658,952 - +0.0 658,952 - -0.7 658,952 - -0.6 658,954 + -0.7 658,959 - +0.3 658,980 + -1.1 658,993 - -0.3 658,993 - +0.4 659,021 + -1.2 659,047 - +1.2 659,056 + +1.0 659,064 - -0.9 659,079 - -0.2 659,083 - -1.5 659,120 + +1.1 659,120 + +0.3 659,120 - +1.2 659,122 + -0.7 659,122 + -1.7 659,125 - -0.9 659,153 + +0.2 659,231 + cya2 Synpcc7942_0663 0.13 +0.4 659,231 + cya2 Synpcc7942_0663 0.13 +0.2 659,231 - cya2 Synpcc7942_0663 0.13 +0.0 659,231 - cya2 Synpcc7942_0663 0.13 +0.9 659,238 - cya2 Synpcc7942_0663 0.14 +0.5 659,239 - cya2 Synpcc7942_0663 0.14 +0.8 659,259 + cya2 Synpcc7942_0663 0.15 -0.3 659,310 + cya2 Synpcc7942_0663 0.18 +0.6 659,369 + cya2 Synpcc7942_0663 0.21 -1.5 659,379 + cya2 Synpcc7942_0663 0.21 -0.1 659,392 - cya2 Synpcc7942_0663 0.22 -1.4 659,392 - cya2 Synpcc7942_0663 0.22 +0.4 659,392 - cya2 Synpcc7942_0663 0.22 -1.8 659,423 - cya2 Synpcc7942_0663 0.23 -0.7 659,429 + cya2 Synpcc7942_0663 0.24 +1.2 659,446 + cya2 Synpcc7942_0663 0.25 +0.0 659,452 + cya2 Synpcc7942_0663 0.25 -2.9 659,459 - cya2 Synpcc7942_0663 0.25 -2.9 659,479 + cya2 Synpcc7942_0663 0.26 +0.6 659,479 + cya2 Synpcc7942_0663 0.26 -2.3 659,487 - cya2 Synpcc7942_0663 0.27 +0.2 659,503 + -0.7 659,545 - cya2 Synpcc7942_0663 0.30 -0.8 659,550 - cya2 Synpcc7942_0663 0.30 -0.5 659,640 + cya2 Synpcc7942_0663 0.35 +0.3 659,650 + cya2 Synpcc7942_0663 0.35 +0.2 659,650 + cya2 Synpcc7942_0663 0.35 +1.3 659,653 - cya2 Synpcc7942_0663 0.36 +0.2 659,658 - cya2 Synpcc7942_0663 0.36 -0.7 659,658 - cya2 Synpcc7942_0663 0.36 -0.2 659,678 + cya2 Synpcc7942_0663 0.37 +1.2 659,702 - cya2 Synpcc7942_0663 0.38 +1.0 659,721 + cya2 Synpcc7942_0663 0.39 -0.9 659,721 + cya2 Synpcc7942_0663 0.39 +2.2 659,729 - cya2 Synpcc7942_0663 0.40 +0.7 659,755 - cya2 Synpcc7942_0663 0.41 -1.1 659,780 + cya2 Synpcc7942_0663 0.42 -1.1 659,795 + cya2 Synpcc7942_0663 0.43 +0.8 659,795 + cya2 Synpcc7942_0663 0.43 +0.1 659,797 + cya2 Synpcc7942_0663 0.43 -0.6 659,803 - cya2 Synpcc7942_0663 0.43 +1.8 659,803 - cya2 Synpcc7942_0663 0.43 -1.0 659,803 - cya2 Synpcc7942_0663 0.43 +0.9 659,805 + cya2 Synpcc7942_0663 0.44 +0.8 659,805 + -1.0 659,813 - cya2 Synpcc7942_0663 0.44 +0.3 659,813 - cya2 Synpcc7942_0663 0.44 -3.1 659,818 - cya2 Synpcc7942_0663 0.44 -0.3 659,840 + cya2 Synpcc7942_0663 0.45 +0.7 659,857 + cya2 Synpcc7942_0663 0.46 +0.1
Or see this region's nucleotide sequence