Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS23065

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS23060 and RS_RS26365 are separated by 31 nucleotidesRS_RS26365 and RS_RS23065 are separated by 141 nucleotidesRS_RS23065 and RS_RS23070 are separated by 156 nucleotides RS_RS23060: RS_RS23060 - LLM class flavin-dependent oxidoreductase, at 1,562,030 to 1,563,004 _RS23060 RS_RS26365: RS_RS26365 - hypothetical protein, at 1,563,036 to 1,563,239 _RS26365 RS_RS23065: RS_RS23065 - hypothetical protein, at 1,563,381 to 1,564,421 _RS23065 RS_RS23070: RS_RS23070 - alpha/beta hydrolase, at 1,564,578 to 1,565,396 _RS23070 Position (kb) 1563 1564 1565Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 1562.860 kb on - strand, within RS_RS23060at 1563.092 kb on + strand, within RS_RS26365at 1563.092 kb on + strand, within RS_RS26365at 1563.092 kb on + strand, within RS_RS26365at 1563.093 kb on - strand, within RS_RS26365at 1563.093 kb on - strand, within RS_RS26365at 1563.093 kb on - strand, within RS_RS26365at 1563.096 kb on + strand, within RS_RS26365at 1563.096 kb on + strand, within RS_RS26365at 1563.097 kb on - strand, within RS_RS26365at 1563.097 kb on - strand, within RS_RS26365at 1563.113 kb on + strand, within RS_RS26365at 1563.114 kb on - strand, within RS_RS26365at 1563.347 kb on + strandat 1563.348 kb on - strandat 1563.348 kb on - strandat 1563.348 kb on - strandat 1563.478 kb on - strandat 1563.478 kb on - strandat 1563.531 kb on + strand, within RS_RS23065at 1563.532 kb on - strand, within RS_RS23065at 1563.532 kb on - strand, within RS_RS23065at 1563.556 kb on - strand, within RS_RS23065at 1563.624 kb on + strand, within RS_RS23065at 1563.625 kb on - strand, within RS_RS23065at 1563.625 kb on - strand, within RS_RS23065at 1563.625 kb on - strand, within RS_RS23065at 1563.625 kb on - strand, within RS_RS23065at 1564.051 kb on - strand, within RS_RS23065at 1564.143 kb on + strand, within RS_RS23065at 1564.147 kb on - strand, within RS_RS23065at 1564.147 kb on - strand, within RS_RS23065at 1564.469 kb on - strandat 1564.500 kb on - strandat 1564.500 kb on - strandat 1564.500 kb on - strandat 1564.720 kb on - strand, within RS_RS23070at 1564.720 kb on - strand, within RS_RS23070at 1565.089 kb on - strand, within RS_RS23070at 1565.104 kb on - strand, within RS_RS23070at 1565.104 kb on - strand, within RS_RS23070at 1565.235 kb on + strand, within RS_RS23070at 1565.236 kb on - strand, within RS_RS23070at 1565.236 kb on - strand, within RS_RS23070at 1565.331 kb on + strandat 1565.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,562,860 - RS_RS23060 0.85 +1.2
1,563,092 + RS_RS26365 0.27 +0.7
1,563,092 + RS_RS26365 0.27 -1.1
1,563,092 + RS_RS26365 0.27 -0.4
1,563,093 - RS_RS26365 0.28 -0.7
1,563,093 - RS_RS26365 0.28 -0.7
1,563,093 - RS_RS26365 0.28 +0.6
1,563,096 + RS_RS26365 0.29 -2.6
1,563,096 + RS_RS26365 0.29 -2.8
1,563,097 - RS_RS26365 0.30 +0.9
1,563,097 - RS_RS26365 0.30 -0.4
1,563,113 + RS_RS26365 0.38 +0.3
1,563,114 - RS_RS26365 0.38 -0.4
1,563,347 + +0.0
1,563,348 - +0.2
1,563,348 - +0.6
1,563,348 - -2.4
1,563,478 - +0.4
1,563,478 - -0.0
1,563,531 + RS_RS23065 0.14 +1.9
1,563,532 - RS_RS23065 0.15 +0.3
1,563,532 - RS_RS23065 0.15 -0.3
1,563,556 - RS_RS23065 0.17 -4.3
1,563,624 + RS_RS23065 0.23 -1.6
1,563,625 - RS_RS23065 0.23 -0.5
1,563,625 - RS_RS23065 0.23 +0.8
1,563,625 - RS_RS23065 0.23 +2.2
1,563,625 - RS_RS23065 0.23 -2.4
1,564,051 - RS_RS23065 0.64 -5.3
1,564,143 + RS_RS23065 0.73 -2.1
1,564,147 - RS_RS23065 0.74 -0.6
1,564,147 - RS_RS23065 0.74 -0.0
1,564,469 - -0.1
1,564,500 - +0.1
1,564,500 - +1.4
1,564,500 - -0.1
1,564,720 - RS_RS23070 0.17 -0.8
1,564,720 - RS_RS23070 0.17 -0.2
1,565,089 - RS_RS23070 0.62 +1.0
1,565,104 - RS_RS23070 0.64 +0.8
1,565,104 - RS_RS23070 0.64 -1.2
1,565,235 + RS_RS23070 0.80 -1.0
1,565,236 - RS_RS23070 0.80 -1.6
1,565,236 - RS_RS23070 0.80 +0.8
1,565,331 + +0.5
1,565,332 - +1.9

Or see this region's nucleotide sequence