Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS20090

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS20080 and RS_RS20085 overlap by 4 nucleotidesRS_RS20085 and RS_RS20090 overlap by 4 nucleotidesRS_RS20090 and RS_RS20095 overlap by 4 nucleotides RS_RS20080: RS_RS20080 - cobalamin biosynthesis protein CbiG, at 751,011 to 751,775 _RS20080 RS_RS20085: RS_RS20085 - precorrin-4 C(11)-methyltransferase, at 751,772 to 752,587 _RS20085 RS_RS20090: RS_RS20090 - precorrin-2 C(20)-methyltransferase, at 752,584 to 753,315 _RS20090 RS_RS20095: RS_RS20095 - cobalt-precorrin-5B (C(1))-methyltransferase, at 753,312 to 754,463 _RS20095 Position (kb) 752 753 754Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 751.690 kb on + strand, within RS_RS20080at 751.690 kb on + strand, within RS_RS20080at 751.690 kb on + strand, within RS_RS20080at 751.691 kb on - strand, within RS_RS20080at 751.691 kb on - strand, within RS_RS20080at 751.691 kb on - strand, within RS_RS20080at 751.691 kb on - strand, within RS_RS20080at 751.870 kb on - strand, within RS_RS20085at 751.870 kb on - strand, within RS_RS20085at 752.328 kb on + strand, within RS_RS20085at 752.329 kb on - strand, within RS_RS20085at 752.329 kb on - strand, within RS_RS20085at 752.392 kb on - strand, within RS_RS20085at 752.493 kb on + strand, within RS_RS20085at 752.493 kb on + strand, within RS_RS20085at 752.494 kb on - strand, within RS_RS20085at 752.494 kb on - strand, within RS_RS20085at 752.494 kb on - strand, within RS_RS20085at 752.577 kb on + strandat 752.577 kb on + strandat 752.577 kb on + strandat 752.578 kb on - strandat 752.987 kb on + strand, within RS_RS20090at 752.987 kb on + strand, within RS_RS20090at 752.987 kb on + strand, within RS_RS20090at 752.987 kb on + strand, within RS_RS20090at 752.987 kb on + strand, within RS_RS20090at 752.988 kb on - strand, within RS_RS20090at 752.996 kb on + strand, within RS_RS20090at 752.996 kb on + strand, within RS_RS20090at 752.996 kb on + strand, within RS_RS20090at 752.996 kb on + strand, within RS_RS20090at 752.997 kb on - strand, within RS_RS20090at 752.997 kb on - strand, within RS_RS20090at 752.997 kb on - strand, within RS_RS20090at 752.997 kb on - strand, within RS_RS20090at 753.023 kb on + strand, within RS_RS20090at 753.023 kb on + strand, within RS_RS20090at 753.081 kb on - strand, within RS_RS20090at 753.081 kb on - strand, within RS_RS20090at 753.212 kb on + strand, within RS_RS20090at 753.212 kb on + strand, within RS_RS20090at 753.212 kb on + strand, within RS_RS20090at 753.213 kb on - strand, within RS_RS20090at 753.497 kb on + strand, within RS_RS20095at 753.497 kb on + strand, within RS_RS20095at 753.498 kb on - strand, within RS_RS20095at 753.700 kb on + strand, within RS_RS20095at 753.844 kb on + strand, within RS_RS20095at 753.844 kb on + strand, within RS_RS20095at 753.844 kb on + strand, within RS_RS20095at 753.844 kb on + strand, within RS_RS20095at 753.845 kb on - strand, within RS_RS20095at 753.845 kb on - strand, within RS_RS20095at 753.845 kb on - strand, within RS_RS20095at 753.845 kb on - strand, within RS_RS20095at 754.220 kb on - strand, within RS_RS20095at 754.292 kb on - strand, within RS_RS20095at 754.292 kb on - strand, within RS_RS20095

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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751,690 + RS_RS20080 0.89 +0.9
751,690 + RS_RS20080 0.89 -1.5
751,690 + RS_RS20080 0.89 +1.1
751,691 - RS_RS20080 0.89 -1.8
751,691 - RS_RS20080 0.89 -2.6
751,691 - RS_RS20080 0.89 -2.1
751,691 - RS_RS20080 0.89 +0.9
751,870 - RS_RS20085 0.12 -1.1
751,870 - RS_RS20085 0.12 -1.0
752,328 + RS_RS20085 0.68 +0.3
752,329 - RS_RS20085 0.68 +0.7
752,329 - RS_RS20085 0.68 +0.4
752,392 - RS_RS20085 0.76 +2.0
752,493 + RS_RS20085 0.88 -3.5
752,493 + RS_RS20085 0.88 -1.9
752,494 - RS_RS20085 0.88 +0.7
752,494 - RS_RS20085 0.88 -0.5
752,494 - RS_RS20085 0.88 -0.4
752,577 + -0.7
752,577 + -1.7
752,577 + -1.7
752,578 - -2.5
752,987 + RS_RS20090 0.55 -0.3
752,987 + RS_RS20090 0.55 -0.8
752,987 + RS_RS20090 0.55 +0.6
752,987 + RS_RS20090 0.55 +0.8
752,987 + RS_RS20090 0.55 -0.2
752,988 - RS_RS20090 0.55 -1.6
752,996 + RS_RS20090 0.56 +0.3
752,996 + RS_RS20090 0.56 -3.0
752,996 + RS_RS20090 0.56 -1.4
752,996 + RS_RS20090 0.56 -0.1
752,997 - RS_RS20090 0.56 -1.1
752,997 - RS_RS20090 0.56 -2.4
752,997 - RS_RS20090 0.56 -1.7
752,997 - RS_RS20090 0.56 +0.5
753,023 + RS_RS20090 0.60 +0.7
753,023 + RS_RS20090 0.60 +0.9
753,081 - RS_RS20090 0.68 -1.1
753,081 - RS_RS20090 0.68 +1.1
753,212 + RS_RS20090 0.86 +1.2
753,212 + RS_RS20090 0.86 +0.8
753,212 + RS_RS20090 0.86 -1.3
753,213 - RS_RS20090 0.86 -1.0
753,497 + RS_RS20095 0.16 -0.8
753,497 + RS_RS20095 0.16 +0.3
753,498 - RS_RS20095 0.16 +0.4
753,700 + RS_RS20095 0.34 -1.7
753,844 + RS_RS20095 0.46 +0.2
753,844 + RS_RS20095 0.46 +0.5
753,844 + RS_RS20095 0.46 -2.2
753,844 + RS_RS20095 0.46 -1.5
753,845 - RS_RS20095 0.46 -1.2
753,845 - RS_RS20095 0.46 -0.3
753,845 - RS_RS20095 0.46 -3.0
753,845 - RS_RS20095 0.46 +2.2
754,220 - RS_RS20095 0.79 -1.6
754,292 - RS_RS20095 0.85 +1.1
754,292 - RS_RS20095 0.85 -2.3

Or see this region's nucleotide sequence