Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS19375 and RS_RS19380 overlap by 11 nucleotides RS_RS19380 and RS_RS19385 overlap by 8 nucleotides
RS_RS19375: RS_RS19375 - hypothetical protein, at 579,339 to 579,833
_RS19375
RS_RS19380: RS_RS19380 - hypothetical protein, at 579,823 to 580,539
_RS19380
RS_RS19385: RS_RS19385 - type II/IV secretion system protein, at 580,532 to 581,785
_RS19385
Position (kb) 579
580
581 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 578.919 kb on + strand at 578.919 kb on + strand at 578.920 kb on - strand at 578.920 kb on - strand at 578.920 kb on - strand at 578.920 kb on - strand at 578.921 kb on + strand at 579.018 kb on + strand at 579.108 kb on + strand at 579.111 kb on - strand at 579.149 kb on + strand at 579.273 kb on + strand at 579.327 kb on - strand at 579.327 kb on - strand at 579.370 kb on + strand at 579.371 kb on - strand at 580.155 kb on - strand, within RS_RS19380 at 580.250 kb on + strand, within RS_RS19380 at 580.353 kb on - strand, within RS_RS19380 at 580.520 kb on + strand at 580.521 kb on - strand at 580.529 kb on + strand at 580.746 kb on + strand, within RS_RS19385 at 580.869 kb on + strand, within RS_RS19385 at 580.869 kb on + strand, within RS_RS19385 at 580.870 kb on - strand, within RS_RS19385 at 581.178 kb on + strand, within RS_RS19385 at 581.178 kb on + strand, within RS_RS19385 at 581.179 kb on - strand, within RS_RS19385
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 578,919 + -1.8 578,919 + +0.3 578,920 - -0.4 578,920 - +0.4 578,920 - +0.5 578,920 - +1.2 578,921 + -4.2 579,018 + +0.3 579,108 + -1.1 579,111 - -1.2 579,149 + +0.4 579,273 + -0.3 579,327 - +1.2 579,327 - -1.3 579,370 + +0.5 579,371 - +0.6 580,155 - RS_RS19380 0.46 -1.5 580,250 + RS_RS19380 0.60 +0.1 580,353 - RS_RS19380 0.74 +1.2 580,520 + +1.6 580,521 - -1.8 580,529 + -1.4 580,746 + RS_RS19385 0.17 +2.4 580,869 + RS_RS19385 0.27 -0.3 580,869 + RS_RS19385 0.27 +0.4 580,870 - RS_RS19385 0.27 -1.2 581,178 + RS_RS19385 0.52 +3.1 581,178 + RS_RS19385 0.52 +1.2 581,179 - RS_RS19385 0.52 +1.7
Or see this region's nucleotide sequence