Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18550 and RS_RS18555 are separated by 44 nucleotides RS_RS18555 and RS_RS18560 overlap by 29 nucleotides
RS_RS18550: RS_RS18550 - hypothetical protein, at 375,790 to 376,779
_RS18550
RS_RS18555: RS_RS18555 - TolC family protein, at 376,824 to 378,308
_RS18555
RS_RS18560: RS_RS18560 - HlyD family type I secretion periplasmic adaptor subunit, at 378,280 to 379,623
_RS18560
Position (kb) 376
377
378
379 Strain fitness (log2 ratio) -2
-1
0
1 at 375.937 kb on + strand, within RS_RS18550 at 375.937 kb on + strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 375.938 kb on - strand, within RS_RS18550 at 376.001 kb on - strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550 at 376.585 kb on + strand, within RS_RS18550 at 377.182 kb on + strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.183 kb on - strand, within RS_RS18555 at 377.287 kb on + strand, within RS_RS18555 at 377.719 kb on + strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.865 kb on - strand, within RS_RS18555 at 377.957 kb on - strand, within RS_RS18555 at 378.332 kb on + strand at 378.332 kb on + strand at 378.333 kb on - strand at 378.333 kb on - strand at 378.452 kb on + strand, within RS_RS18560 at 378.525 kb on - strand, within RS_RS18560 at 378.533 kb on + strand, within RS_RS18560 at 378.534 kb on - strand, within RS_RS18560 at 378.732 kb on + strand, within RS_RS18560 at 378.733 kb on - strand, within RS_RS18560 at 378.998 kb on + strand, within RS_RS18560
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 375,937 + RS_RS18550 0.15 -0.9 375,937 + RS_RS18550 0.15 -0.4 375,938 - RS_RS18550 0.15 +0.1 375,938 - RS_RS18550 0.15 +1.7 375,938 - RS_RS18550 0.15 -1.1 375,938 - RS_RS18550 0.15 +0.7 375,938 - RS_RS18550 0.15 -0.9 376,001 - RS_RS18550 0.21 -0.3 376,585 + RS_RS18550 0.80 -0.6 376,585 + RS_RS18550 0.80 -0.6 377,182 + RS_RS18555 0.24 +0.6 377,183 - RS_RS18555 0.24 +0.2 377,183 - RS_RS18555 0.24 +1.7 377,183 - RS_RS18555 0.24 +1.1 377,287 + RS_RS18555 0.31 -0.7 377,719 + RS_RS18555 0.60 +0.0 377,865 - RS_RS18555 0.70 +1.5 377,865 - RS_RS18555 0.70 +0.6 377,865 - RS_RS18555 0.70 +0.3 377,865 - RS_RS18555 0.70 -0.3 377,865 - RS_RS18555 0.70 +0.6 377,865 - RS_RS18555 0.70 +0.6 377,957 - RS_RS18555 0.76 +0.3 378,332 + -0.9 378,332 + +1.2 378,333 - -2.7 378,333 - -0.6 378,452 + RS_RS18560 0.13 +0.9 378,525 - RS_RS18560 0.18 +1.7 378,533 + RS_RS18560 0.19 +0.7 378,534 - RS_RS18560 0.19 -0.9 378,732 + RS_RS18560 0.34 -1.1 378,733 - RS_RS18560 0.34 -0.4 378,998 + RS_RS18560 0.53 +1.3
Or see this region's nucleotide sequence