Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS18530 and RS_RS18535 are separated by 190 nucleotides RS_RS18535 and RS_RS18540 are separated by 50 nucleotides
RS_RS18530: RS_RS18530 - DNA-binding response regulator, at 368,825 to 369,724
_RS18530
RS_RS18535: RS_RS18535 - poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA, at 369,915 to 372,335
_RS18535
RS_RS18540: RS_RS18540 - poly-beta-1,6-N-acetyl-D-glucosamine N-deacetylase PgaB, at 372,386 to 374,515
_RS18540
Position (kb) 369
370
371
372
373 Strain fitness (log2 ratio) -2
-1
0
1
2 at 369.110 kb on + strand, within RS_RS18530 at 369.110 kb on + strand, within RS_RS18530 at 369.110 kb on + strand, within RS_RS18530 at 369.111 kb on - strand, within RS_RS18530 at 369.111 kb on - strand, within RS_RS18530 at 369.111 kb on - strand, within RS_RS18530 at 369.182 kb on + strand, within RS_RS18530 at 369.426 kb on - strand, within RS_RS18530 at 370.830 kb on + strand, within RS_RS18535 at 370.866 kb on + strand, within RS_RS18535 at 370.893 kb on + strand, within RS_RS18535 at 370.893 kb on + strand, within RS_RS18535 at 370.899 kb on + strand, within RS_RS18535 at 370.899 kb on + strand, within RS_RS18535 at 370.899 kb on + strand, within RS_RS18535 at 370.900 kb on - strand, within RS_RS18535 at 371.002 kb on - strand, within RS_RS18535 at 371.002 kb on - strand, within RS_RS18535 at 371.025 kb on + strand, within RS_RS18535 at 371.077 kb on - strand, within RS_RS18535 at 371.077 kb on - strand, within RS_RS18535 at 371.077 kb on - strand, within RS_RS18535 at 371.293 kb on - strand, within RS_RS18535 at 371.293 kb on - strand, within RS_RS18535 at 371.293 kb on - strand, within RS_RS18535 at 371.464 kb on - strand, within RS_RS18535 at 371.464 kb on - strand, within RS_RS18535 at 371.464 kb on - strand, within RS_RS18535 at 371.554 kb on - strand, within RS_RS18535 at 371.814 kb on + strand, within RS_RS18535 at 371.823 kb on - strand, within RS_RS18535 at 371.904 kb on + strand, within RS_RS18535 at 371.904 kb on + strand, within RS_RS18535 at 371.990 kb on + strand, within RS_RS18535 at 371.991 kb on - strand, within RS_RS18535 at 371.991 kb on - strand, within RS_RS18535 at 372.049 kb on - strand, within RS_RS18535 at 372.069 kb on + strand, within RS_RS18535 at 372.144 kb on + strand at 372.163 kb on - strand at 372.310 kb on - strand at 372.716 kb on + strand, within RS_RS18540 at 372.717 kb on - strand, within RS_RS18540 at 372.717 kb on - strand, within RS_RS18540 at 373.167 kb on - strand, within RS_RS18540 at 373.167 kb on - strand, within RS_RS18540 at 373.326 kb on + strand, within RS_RS18540 at 373.326 kb on + strand, within RS_RS18540
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 369,110 + RS_RS18530 0.32 -0.3 369,110 + RS_RS18530 0.32 +2.0 369,110 + RS_RS18530 0.32 -1.1 369,111 - RS_RS18530 0.32 -2.2 369,111 - RS_RS18530 0.32 -1.9 369,111 - RS_RS18530 0.32 +0.7 369,182 + RS_RS18530 0.40 +0.5 369,426 - RS_RS18530 0.67 +0.6 370,830 + RS_RS18535 0.38 +0.8 370,866 + RS_RS18535 0.39 +2.1 370,893 + RS_RS18535 0.40 -0.1 370,893 + RS_RS18535 0.40 -1.1 370,899 + RS_RS18535 0.41 +1.1 370,899 + RS_RS18535 0.41 +0.7 370,899 + RS_RS18535 0.41 -0.3 370,900 - RS_RS18535 0.41 -1.5 371,002 - RS_RS18535 0.45 -1.1 371,002 - RS_RS18535 0.45 +2.5 371,025 + RS_RS18535 0.46 +2.1 371,077 - RS_RS18535 0.48 +1.1 371,077 - RS_RS18535 0.48 -2.1 371,077 - RS_RS18535 0.48 -2.2 371,293 - RS_RS18535 0.57 -0.8 371,293 - RS_RS18535 0.57 -2.7 371,293 - RS_RS18535 0.57 +0.4 371,464 - RS_RS18535 0.64 -0.2 371,464 - RS_RS18535 0.64 -0.6 371,464 - RS_RS18535 0.64 +0.3 371,554 - RS_RS18535 0.68 +1.2 371,814 + RS_RS18535 0.78 +2.0 371,823 - RS_RS18535 0.79 -0.3 371,904 + RS_RS18535 0.82 -0.7 371,904 + RS_RS18535 0.82 +1.6 371,990 + RS_RS18535 0.86 +0.4 371,991 - RS_RS18535 0.86 +0.3 371,991 - RS_RS18535 0.86 +1.2 372,049 - RS_RS18535 0.88 +0.5 372,069 + RS_RS18535 0.89 -1.0 372,144 + -1.7 372,163 - -0.0 372,310 - -0.2 372,716 + RS_RS18540 0.15 +1.9 372,717 - RS_RS18540 0.16 +2.3 372,717 - RS_RS18540 0.16 -0.4 373,167 - RS_RS18540 0.37 +0.3 373,167 - RS_RS18540 0.37 +0.5 373,326 + RS_RS18540 0.44 -1.1 373,326 + RS_RS18540 0.44 -2.5
Or see this region's nucleotide sequence