Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS06665

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS06660 and RS_RS06665 are separated by 5 nucleotidesRS_RS06665 and RS_RS06670 are separated by 79 nucleotides RS_RS06660: RS_RS06660 - threonine synthase, at 1,413,889 to 1,415,334 _RS06660 RS_RS06665: RS_RS06665 - IclR family transcriptional regulator, at 1,415,340 to 1,415,957 _RS06665 RS_RS06670: RS_RS06670 - molybdopterin molybdenumtransferase MoeA, at 1,416,037 to 1,417,296 _RS06670 Position (kb) 1415 1416Strain fitness (log2 ratio) -3 -2 -1 0 1at 1415.333 kb on - strandat 1415.333 kb on - strandat 1415.761 kb on - strand, within RS_RS06665at 1415.764 kb on - strand, within RS_RS06665at 1416.664 kb on + strand, within RS_RS06670at 1416.665 kb on - strand, within RS_RS06670at 1416.745 kb on - strand, within RS_RS06670

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,415,333 - -0.9
1,415,333 - +0.5
1,415,761 - RS_RS06665 0.68 +1.4
1,415,764 - RS_RS06665 0.69 -2.4
1,416,664 + RS_RS06670 0.50 -2.8
1,416,665 - RS_RS06670 0.50 -0.5
1,416,745 - RS_RS06670 0.56 -0.0

Or see this region's nucleotide sequence