Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS05305 and RS_RS05310 are separated by 68 nucleotides RS_RS05310 and RS_RS05315 are separated by 137 nucleotides RS_RS05315 and RS_RS05320 are separated by 54 nucleotides RS_RS05320 and RS_RS05325 are separated by 91 nucleotides RS_RS05325 and RS_RS25415 overlap by 34 nucleotides
RS_RS05305: RS_RS05305 - excinuclease ABC subunit UvrC, at 1,123,446 to 1,125,455
_RS05305
RS_RS05310: RS_RS05310 - CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase, at 1,125,524 to 1,126,099
_RS05310
RS_RS05315: RS_RS05315 - tRNA-Gly, at 1,126,237 to 1,126,312
_RS05315
RS_RS05320: RS_RS05320 - tRNA-Gly, at 1,126,367 to 1,126,442
_RS05320
RS_RS05325: RS_RS05325 - tRNA-Cys, at 1,126,534 to 1,126,607
_RS05325
RS_RS25415: RS_RS25415 - hypothetical protein, at 1,126,574 to 1,126,759
_RS25415
Position (kb) 1125
1126
1127 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 1124.905 kb on - strand, within RS_RS05305 at 1125.519 kb on + strand at 1126.476 kb on + strand at 1126.967 kb on + strand at 1127.081 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 1,124,905 - RS_RS05305 0.73 -0.4 1,125,519 + +0.5 1,126,476 + -0.5 1,126,967 + -1.8 1,127,081 - -2.8
Or see this region's nucleotide sequence