Strain Fitness in Ralstonia solanacearum GMI1000 around RS_RS04905

Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntRS_RS04900 and RS_RS04905 are separated by 7 nucleotidesRS_RS04905 and RS_RS04910 are separated by 85 nucleotides RS_RS04900: RS_RS04900 - molecular chaperone HtpG, at 1,041,349 to 1,043,271 _RS04900 RS_RS04905: RS_RS04905 - DNA-deoxyinosine glycosylase, at 1,043,279 to 1,043,779 _RS04905 RS_RS04910: RS_RS04910 - glutathione S-transferase, at 1,043,865 to 1,044,947 _RS04910 Position (kb) 1043 1044Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2 3 4at 1042.486 kb on + strand, within RS_RS04900at 1042.486 kb on + strand, within RS_RS04900at 1042.487 kb on - strand, within RS_RS04900at 1042.487 kb on - strand, within RS_RS04900at 1042.487 kb on - strand, within RS_RS04900at 1042.630 kb on + strand, within RS_RS04900at 1042.631 kb on - strand, within RS_RS04900at 1042.631 kb on - strand, within RS_RS04900at 1042.666 kb on + strand, within RS_RS04900at 1042.666 kb on + strand, within RS_RS04900at 1042.666 kb on + strand, within RS_RS04900at 1042.667 kb on - strand, within RS_RS04900at 1042.667 kb on - strand, within RS_RS04900at 1042.670 kb on - strand, within RS_RS04900at 1043.240 kb on - strandat 1043.393 kb on + strand, within RS_RS04905at 1043.393 kb on + strand, within RS_RS04905at 1043.396 kb on + strand, within RS_RS04905at 1043.396 kb on + strand, within RS_RS04905at 1043.396 kb on + strand, within RS_RS04905at 1043.397 kb on - strand, within RS_RS04905at 1043.397 kb on - strand, within RS_RS04905at 1043.397 kb on - strand, within RS_RS04905at 1043.468 kb on + strand, within RS_RS04905at 1043.983 kb on + strand, within RS_RS04910at 1043.983 kb on + strand, within RS_RS04910at 1044.041 kb on - strand, within RS_RS04910at 1044.056 kb on - strand, within RS_RS04910at 1044.154 kb on + strand, within RS_RS04910at 1044.154 kb on + strand, within RS_RS04910at 1044.154 kb on + strand, within RS_RS04910at 1044.155 kb on - strand, within RS_RS04910at 1044.166 kb on + strand, within RS_RS04910at 1044.167 kb on - strand, within RS_RS04910at 1044.289 kb on + strand, within RS_RS04910at 1044.289 kb on + strand, within RS_RS04910at 1044.290 kb on - strand, within RS_RS04910at 1044.290 kb on - strand, within RS_RS04910at 1044.290 kb on - strand, within RS_RS04910at 1044.454 kb on + strand, within RS_RS04910at 1044.454 kb on + strand, within RS_RS04910at 1044.455 kb on - strand, within RS_RS04910at 1044.475 kb on + strand, within RS_RS04910at 1044.695 kb on - strand, within RS_RS04910

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Per-strain Table

Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
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1,042,486 + RS_RS04900 0.59 +2.2
1,042,486 + RS_RS04900 0.59 +1.7
1,042,487 - RS_RS04900 0.59 +0.8
1,042,487 - RS_RS04900 0.59 +0.1
1,042,487 - RS_RS04900 0.59 -0.2
1,042,630 + RS_RS04900 0.67 +1.5
1,042,631 - RS_RS04900 0.67 -0.2
1,042,631 - RS_RS04900 0.67 +0.4
1,042,666 + RS_RS04900 0.68 +1.4
1,042,666 + RS_RS04900 0.68 +0.8
1,042,666 + RS_RS04900 0.68 +0.8
1,042,667 - RS_RS04900 0.69 +1.4
1,042,667 - RS_RS04900 0.69 +1.0
1,042,670 - RS_RS04900 0.69 +1.9
1,043,240 - +0.5
1,043,393 + RS_RS04905 0.23 +0.2
1,043,393 + RS_RS04905 0.23 -1.4
1,043,396 + RS_RS04905 0.23 -0.0
1,043,396 + RS_RS04905 0.23 +1.3
1,043,396 + RS_RS04905 0.23 +0.1
1,043,397 - RS_RS04905 0.24 +1.0
1,043,397 - RS_RS04905 0.24 +1.4
1,043,397 - RS_RS04905 0.24 +1.2
1,043,468 + RS_RS04905 0.38 +2.9
1,043,983 + RS_RS04910 0.11 -0.8
1,043,983 + RS_RS04910 0.11 +1.2
1,044,041 - RS_RS04910 0.16 +1.1
1,044,056 - RS_RS04910 0.18 +1.2
1,044,154 + RS_RS04910 0.27 -0.1
1,044,154 + RS_RS04910 0.27 +0.6
1,044,154 + RS_RS04910 0.27 -3.4
1,044,155 - RS_RS04910 0.27 +0.8
1,044,166 + RS_RS04910 0.28 -1.2
1,044,167 - RS_RS04910 0.28 +1.3
1,044,289 + RS_RS04910 0.39 +1.3
1,044,289 + RS_RS04910 0.39 -0.0
1,044,290 - RS_RS04910 0.39 +1.0
1,044,290 - RS_RS04910 0.39 -1.3
1,044,290 - RS_RS04910 0.39 +3.8
1,044,454 + RS_RS04910 0.54 -0.4
1,044,454 + RS_RS04910 0.54 +1.6
1,044,455 - RS_RS04910 0.54 -4.9
1,044,475 + RS_RS04910 0.56 -0.5
1,044,695 - RS_RS04910 0.77 -0.9

Or see this region's nucleotide sequence