Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS04585 and RS_RS04590 are separated by 177 nucleotides RS_RS04590 and RS_RS04595 are separated by 54 nucleotides
RS_RS04585: RS_RS04585 - MetQ/NlpA family ABC transporter substrate-binding protein, at 973,512 to 974,312
_RS04585
RS_RS04590: RS_RS04590 - electron transfer flavoprotein subunit beta/FixA family protein, at 974,490 to 975,239
_RS04590
RS_RS04595: RS_RS04595 - electron transfer flavoprotein subunit alpha, at 975,294 to 976,229
_RS04595
Position (kb) 974
975
976 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 973.707 kb on + strand, within RS_RS04585 at 973.758 kb on + strand, within RS_RS04585 at 974.109 kb on + strand, within RS_RS04585 at 974.110 kb on - strand, within RS_RS04585 at 974.110 kb on - strand, within RS_RS04585 at 974.244 kb on + strand at 974.245 kb on - strand at 974.245 kb on - strand at 974.339 kb on + strand at 974.339 kb on + strand at 974.340 kb on - strand at 974.364 kb on + strand at 974.364 kb on + strand at 974.365 kb on - strand at 974.365 kb on - strand at 974.440 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 973,707 + RS_RS04585 0.24 +0.3 973,758 + RS_RS04585 0.31 +0.3 974,109 + RS_RS04585 0.75 +1.4 974,110 - RS_RS04585 0.75 +1.2 974,110 - RS_RS04585 0.75 -1.1 974,244 + +0.3 974,245 - +0.8 974,245 - -0.3 974,339 + -0.8 974,339 + +0.6 974,340 - +1.8 974,364 + -1.8 974,364 + -3.9 974,365 - -0.8 974,365 - -0.5 974,440 - -1.0
Or see this region's nucleotide sequence