Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02930 and RS_RS02935 are separated by 186 nucleotides RS_RS02935 and RS_RS02940 are separated by 19 nucleotides RS_RS02940 and RS_RS02945 are separated by 340 nucleotides
RS_RS02930: RS_RS02930 - MFS transporter, at 629,062 to 630,240
_RS02930
RS_RS02935: RS_RS02935 - hypothetical protein, at 630,427 to 630,774
_RS02935
RS_RS02940: RS_RS02940 - hypothetical protein, at 630,794 to 631,654
_RS02940
RS_RS02945: RS_RS02945 - PAS domain S-box protein, at 631,995 to 634,706
_RS02945
Position (kb) 630
631
632 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 629.895 kb on + strand, within RS_RS02930 at 630.100 kb on + strand, within RS_RS02930 at 630.101 kb on - strand, within RS_RS02930 at 630.101 kb on - strand, within RS_RS02930 at 630.300 kb on + strand at 630.433 kb on + strand at 630.434 kb on - strand at 630.449 kb on + strand at 630.566 kb on - strand, within RS_RS02935 at 630.641 kb on - strand, within RS_RS02935 at 630.728 kb on - strand, within RS_RS02935 at 630.772 kb on + strand at 631.078 kb on + strand, within RS_RS02940 at 631.078 kb on + strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.079 kb on - strand, within RS_RS02940 at 631.082 kb on + strand, within RS_RS02940 at 631.083 kb on - strand, within RS_RS02940 at 631.269 kb on - strand, within RS_RS02940 at 631.317 kb on - strand, within RS_RS02940 at 631.481 kb on - strand, within RS_RS02940 at 631.565 kb on + strand, within RS_RS02940 at 631.786 kb on - strand at 631.893 kb on - strand at 631.906 kb on + strand at 631.907 kb on - strand at 631.994 kb on + strand at 631.994 kb on + strand at 631.995 kb on - strand at 632.118 kb on + strand at 632.119 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 629,895 + RS_RS02930 0.71 -0.2 630,100 + RS_RS02930 0.88 +1.3 630,101 - RS_RS02930 0.88 +0.4 630,101 - RS_RS02930 0.88 +0.8 630,300 + +0.5 630,433 + -2.9 630,434 - +1.4 630,449 + -1.9 630,566 - RS_RS02935 0.40 -0.7 630,641 - RS_RS02935 0.61 -1.0 630,728 - RS_RS02935 0.86 -0.2 630,772 + -0.4 631,078 + RS_RS02940 0.33 +0.0 631,078 + RS_RS02940 0.33 +2.1 631,079 - RS_RS02940 0.33 +2.6 631,079 - RS_RS02940 0.33 -0.0 631,079 - RS_RS02940 0.33 +0.0 631,082 + RS_RS02940 0.33 +0.5 631,083 - RS_RS02940 0.34 +0.0 631,269 - RS_RS02940 0.55 -3.0 631,317 - RS_RS02940 0.61 -2.4 631,481 - RS_RS02940 0.80 -2.1 631,565 + RS_RS02940 0.90 +2.3 631,786 - -0.0 631,893 - +0.3 631,906 + +0.8 631,907 - -0.8 631,994 + +2.2 631,994 + +1.9 631,995 - -1.3 632,118 + -1.1 632,119 - -0.0
Or see this region's nucleotide sequence