Experiment: Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt RS_RS02740 and RS_RS02745 are separated by 198 nucleotides RS_RS02745 and RS_RS02750 overlap by 4 nucleotides
RS_RS02740: RS_RS02740 - MFS transporter, at 591,452 to 593,155
_RS02740
RS_RS02745: RS_RS02745 - DUF4212 domain-containing protein, at 593,354 to 593,671
_RS02745
RS_RS02750: RS_RS02750 - sensor histidine kinase, at 593,668 to 595,209
_RS02750
Position (kb) 593
594 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 592.510 kb on - strand, within RS_RS02740 at 592.662 kb on + strand, within RS_RS02740 at 592.701 kb on + strand, within RS_RS02740 at 592.702 kb on - strand, within RS_RS02740 at 592.702 kb on - strand, within RS_RS02740 at 592.702 kb on - strand, within RS_RS02740 at 592.702 kb on - strand, within RS_RS02740 at 592.797 kb on + strand, within RS_RS02740 at 592.798 kb on - strand, within RS_RS02740 at 592.863 kb on + strand, within RS_RS02740 at 592.863 kb on + strand, within RS_RS02740 at 592.864 kb on - strand, within RS_RS02740 at 592.864 kb on - strand, within RS_RS02740 at 592.864 kb on - strand, within RS_RS02740 at 593.022 kb on + strand at 593.028 kb on + strand at 593.029 kb on - strand at 593.029 kb on - strand at 593.029 kb on - strand at 593.029 kb on - strand at 593.029 kb on - strand at 593.452 kb on - strand, within RS_RS02745 at 593.452 kb on - strand, within RS_RS02745 at 593.473 kb on - strand, within RS_RS02745 at 593.473 kb on - strand, within RS_RS02745 at 593.609 kb on + strand, within RS_RS02745 at 593.609 kb on + strand, within RS_RS02745 at 593.609 kb on + strand, within RS_RS02745 at 593.757 kb on - strand at 593.855 kb on + strand, within RS_RS02750 at 593.856 kb on - strand, within RS_RS02750 at 593.856 kb on - strand, within RS_RS02750 at 593.856 kb on - strand, within RS_RS02750
Per-strain Table
Position Strand Gene LocusTag Fraction Plant=Bonny_Best_Tomato; Treatment=2dpi_Stem_Attached; Sample=Stem; Collection=Centrifuged_to_remove_stem_sap_homogenized_filtered_pelleted remove 592,510 - RS_RS02740 0.62 -0.8 592,662 + RS_RS02740 0.71 -1.0 592,701 + RS_RS02740 0.73 +1.3 592,702 - RS_RS02740 0.73 +0.6 592,702 - RS_RS02740 0.73 +1.5 592,702 - RS_RS02740 0.73 -0.3 592,702 - RS_RS02740 0.73 +0.1 592,797 + RS_RS02740 0.79 -0.0 592,798 - RS_RS02740 0.79 -1.6 592,863 + RS_RS02740 0.83 +0.4 592,863 + RS_RS02740 0.83 +1.4 592,864 - RS_RS02740 0.83 -0.5 592,864 - RS_RS02740 0.83 -3.3 592,864 - RS_RS02740 0.83 -0.2 593,022 + +0.5 593,028 + +1.5 593,029 - -2.8 593,029 - -0.6 593,029 - -1.0 593,029 - -1.8 593,029 - +0.7 593,452 - RS_RS02745 0.31 -0.8 593,452 - RS_RS02745 0.31 -0.5 593,473 - RS_RS02745 0.37 +1.8 593,473 - RS_RS02745 0.37 -0.4 593,609 + RS_RS02745 0.80 +1.3 593,609 + RS_RS02745 0.80 +1.6 593,609 + RS_RS02745 0.80 -0.5 593,757 - +1.8 593,855 + RS_RS02750 0.12 +2.4 593,856 - RS_RS02750 0.12 +0.9 593,856 - RS_RS02750 0.12 -0.7 593,856 - RS_RS02750 0.12 -1.9
Or see this region's nucleotide sequence